Variant report

Variant	rs552750663
Chromosome Location	chr5:167776270-167776271
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:167718627..167721135-chr5:167773864..167777784,5	MCF-7	breast:
2	chr5:167774477..167779814-chr5:167781404..167787238,7	MCF-7	breast:

Variant related genes	Relation type
ENSG00000113645	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534607	chr5:167661667-168454396	Active TSS Bivalent Enhancer Strong transcription Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	nsv949154	chr5:167691208-168323234	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
3	nsv1023985	chr5:167756193-168285807	Strong transcription Bivalent/Poised TSS Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
4	nsv537941	chr5:167756193-168285807	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
5	esv3444818	chr5:167770667-167902204	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases
6	nsv823340	chr5:167775824-167782091	Weak transcription Enhancers Genic enhancers Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:167762200-167791800	Weak transcription	Hela-S3	cervix
2	chr5:167764600-167780400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr5:167765000-167776600	Weak transcription	HepG2	liver
4	chr5:167766800-167783200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr5:167770600-167780200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr5:167773000-167777600	Enhancers	Pancreas	Pancrea
7	chr5:167773600-167776800	Enhancers	Esophagus	oesophagus
8	chr5:167773600-167777000	Enhancers	Rectal Mucosa Donor 29	rectum
9	chr5:167774000-167776800	Enhancers	Lung	lung
10	chr5:167774000-167777000	Enhancers	Gastric	stomach
11	chr5:167774400-167776400	Weak transcription	Fetal Intestine Small	intestine
12	chr5:167774400-167778800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr5:167774400-167781600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr5:167774800-167776800	Weak transcription	Fetal Intestine Large	intestine
15	chr5:167775200-167780200	Weak transcription	HMEC	breast
16	chr5:167775200-167783000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
17	chr5:167775400-167778400	Weak transcription	HUES48 Cell Line	embryonic stem cell
18	chr5:167775400-167778800	Weak transcription	Brain Anterior Caudate	brain
19	chr5:167775400-167780000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
20	chr5:167775400-167780000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr5:167775400-167780200	Weak transcription	Brain Angular Gyrus	brain
22	chr5:167775400-167780200	Weak transcription	NHEK	skin
23	chr5:167775600-167776600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
24	chr5:167775600-167778400	Weak transcription	H1 Cell Line	embryonic stem cell
25	chr5:167775600-167783800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
26	chr5:167775800-167778600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr5:167775800-167778600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
28	chr5:167776000-167776400	Weak transcription	Liver	Liver
29	chr5:167776000-167776800	Enhancers	Sigmoid Colon	Sigmoid Colon
30	chr5:167776000-167777600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chr5:167776000-167778000	Strong transcription	A549	lung
32	chr5:167776000-167780400	Weak transcription	Fetal Lung	lung
33	chr5:167776000-167780600	Weak transcription	Placenta	Placenta
34	chr5:167776200-167780200	Weak transcription	Rectal Mucosa Donor 31	rectum
35	chr5:167776200-167780200	Weak transcription	Stomach Mucosa	stomach

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