Variant report

Variant	rs552817557
Chromosome Location	chr13:76210525-76210526
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	STAT5A	chr13:76210454-76211164	GM12878	blood:	n/a	chr13:76210879-76210890
2	CHD2	chr13:76210523-76210961	GM12878	blood:	n/a	chr13:76210708-76210718
3	POLR2A	chr13:76210103-76210834	Hela-S3	cervix:	n/a	n/a
4	POLR2A	chr13:76210403-76211148	GM12878	blood:	n/a	n/a
5	POLR2A	chr13:76210398-76210741	GM12878	blood:	n/a	n/a
6	TCF7L2	chr13:76209581-76211091	HCT-116	colon:	n/a	chr13:76210635-76210644
7	TAF1	chr13:76210391-76210638	H1-hESC	embryonic stem cell:	n/a	n/a
8	POLR2A	chr13:76210412-76210673	H1-hESC	embryonic stem cell:	n/a	n/a
9	POLR2A	chr13:76209759-76211292	ECC-1	luminal epithelium:	n/a	n/a
10	POLR2A	chr13:76210163-76211070	U87	brain:	n/a	n/a
11	MXI1	chr13:76209606-76212673	IMR90	lung:	n/a	chr13:76211344-76211353
12	BCLAF1	chr13:76210410-76210755	GM12878	blood:	n/a	chr13:76210665-76210678
13	POLR2A	chr13:76209890-76211232	SK-N-SH	brain:	n/a	n/a
14	ELF1	chr13:76209883-76210943	GM12878	blood:	n/a	chr13:76210229-76210241
15	POLR2A	chr13:76210163-76210755	U87	brain:	n/a	n/a
16	POLR2A	chr13:76210124-76210612	MCF10A-Er-Src	breast:	n/a	n/a
17	TAF1	chr13:76210413-76210602	GM12892	blood:	n/a	n/a
18	POLR2A	chr13:76209713-76211295	GM18505	blood:	n/a	n/a
19	POLR2A	chr13:76210416-76210657	GM12891	blood:	n/a	n/a
20	POLR2A	chr13:76210325-76210699	GM12892	blood:	n/a	n/a
21	EP300	chr13:76209763-76211424	SK-N-SH	brain:	n/a	chr13:76210328-76210344 chr13:76210480-76210496 chr13:76210487-76210503 chr13:76210041-76210057
22	BHLHE40	chr13:76209286-76211225	HepG2	liver:	n/a	chr13:76210232-76210248 chr13:76209876-76209885 chr13:76209876-76209885
23	POLR2A	chr13:76210315-76211122	GM12892	blood:	n/a	n/a
24	NFIC	chr13:76210415-76211032	GM12878	blood:	n/a	n/a
25	TBP	chr13:76210446-76211159	H1-hESC	embryonic stem cell:	n/a	n/a
26	TCF7L2	chr13:76209874-76211070	Hela-S3	cervix:	n/a	chr13:76210635-76210644
27	FOXM1	chr13:76209725-76211097	ECC-1	luminal epithelium:	n/a	n/a
28	POLR2A	chr13:76209737-76211304	GM12892	blood:	n/a	n/a
29	REST	chr13:76210400-76210659	SK-N-SH	brain:	n/a	n/a
30	MAX	chr13:76209416-76211328	ECC-1	luminal epithelium:	n/a	chr13:76209876-76209885 chr13:76209875-76209886 chr13:76211308-76211318
31	POLR2A	chr13:76210162-76211302	U87	brain:	n/a	n/a
32	MAX	chr13:76210203-76211317	SK-N-SH	brain:	n/a	n/a
33	MAX	chr13:76210303-76211990	H1-hESC	embryonic stem cell:	n/a	chr13:76211758-76211765 chr13:76211757-76211766 chr13:76211756-76211767 chr13:76211757-76211766 chr13:76211756-76211767 chr13:76211756-76211766 chr13:76211308-76211318
34	POLR2A	chr13:76209539-76211273	H1-hESC	embryonic stem cell:	n/a	n/a
35	WRNIP1	chr13:76210502-76210803	GM12878	blood:	n/a	n/a
36	HA-E2F1	chr13:76209789-76210892	Hela-S3	cervix:	n/a	chr13:76209983-76209995 chr13:76209839-76209848 chr13:76210032-76210041
37	ZNF143	chr13:76210342-76211293	GM12878	blood:	n/a	n/a
38	ZKSCAN1	chr13:76210494-76210646	Hela-S3	cervix:	n/a	n/a
39	TCF7L2	chr13:76209808-76210922	HEK293	kidney:	n/a	chr13:76210635-76210644
40	POLR2A	chr13:76210410-76210597	A549	lung:	n/a	n/a
41	POLR2A	chr13:76209569-76211298	ECC-1	luminal epithelium:	n/a	n/a
42	BHLHE40	chr13:76209695-76210786	GM12878	blood:	n/a	chr13:76210232-76210248 chr13:76209876-76209885 chr13:76209876-76209885
43	RUNX3	chr13:76209471-76211208	GM12878	blood:	n/a	n/a
44	POLR2A	chr13:76210409-76210942	HL-60	blood:	n/a	n/a
45	NFIC	chr13:76209632-76210767	ECC-1	luminal epithelium:	n/a	n/a
46	POLR2A	chr13:76210410-76210693	HUVEC	blood vessel:	n/a	n/a
47	SMARCB1	chr13:76209824-76211304	Hela-S3	cervix:	n/a	n/a
48	MAX	chr13:76210475-76211189	GM12878	blood:	n/a	n/a
49	MAZ	chr13:76209615-76210892	Hela-S3	cervix:	n/a	chr13:76209876-76209885 chr13:76209875-76209886
50	POLR2A	chr13:76210388-76210638	Hela-S3	cervix:	n/a	n/a

Variant related genes	Relation type
ENSG00000261105	TF binding region

Extended variants
information (count: 29 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:29 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2751152	chr13:76144199-76288418	Weak transcription Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv976062	chr13:76206320-76211659	Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv1816393	chr13:76207565-76210742	Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	esv3425803	chr13:76208851-76211849	Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	esv13276	chr13:76209699-76211118	Bivalent/Poised TSS Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	esv1818390	chr13:76209750-76211044	Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv562348	chr13:76209779-76210579	Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv562349	chr13:76209779-76210639	Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	esv1791932	chr13:76209779-76210854	Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
10	esv1796506	chr13:76209779-76210854	Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
11	esv1837143	chr13:76209779-76210854	Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
12	esv1843026	chr13:76209779-76210854	Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
13	nsv562350	chr13:76209779-76210854	Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
14	nsv562351	chr13:76209779-76210992	Active TSS Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
15	esv1797534	chr13:76209779-76211057	Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
16	esv1800577	chr13:76209779-76211057	Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
17	esv1803232	chr13:76209779-76211057	Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
18	esv1836179	chr13:76209779-76211623	Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
19	esv1838622	chr13:76209779-76211623	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
20	nsv562352	chr13:76209881-76210639	Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
21	nsv562353	chr13:76209881-76210890	Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
22	nsv562354	chr13:76209881-76210992	Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
23	nsv562355	chr13:76209881-76211057	Bivalent/Poised TSS Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
24	nsv562356	chr13:76209983-76210690	Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
25	nsv562357	chr13:76209983-76210854	Bivalent/Poised TSS Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
26	nsv562358	chr13:76210085-76210742	Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
27	nsv562359	chr13:76210141-76210854	Bivalent/Poised TSS Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
28	nsv562360	chr13:76210311-76211044	Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
29	nsv562361	chr13:76210311-76211057	Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:76208000-76211600	Active TSS	Osteobl	bone
2	chr13:76208600-76210600	Active TSS	Placenta	Placenta
3	chr13:76208600-76211400	Active TSS	Muscle Satellite Cultured Cells	--
4	chr13:76208600-76211800	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr13:76208600-76215000	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr13:76209000-76212000	Active TSS	Breast Myoepithelial Primary Cells	Breast
7	chr13:76209000-76212200	Active TSS	HSMM	muscle
8	chr13:76209000-76214400	Active TSS	NHDF-Ad	bronchial
9	chr13:76209200-76210600	Active TSS	Primary T regulatory cells fromperipheralblood	blood
10	chr13:76209200-76211400	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
11	chr13:76209200-76211600	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
12	chr13:76209200-76211800	Active TSS	Pancreatic Islets	Pancreatic Islet
13	chr13:76209200-76212000	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr13:76209200-76212200	Active TSS	ES-WA7 Cell Line	embryonic stem cell
15	chr13:76209200-76212200	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
16	chr13:76209200-76213600	Active TSS	NHLF	lung
17	chr13:76209200-76214800	Active TSS	HSMMtube	muscle
18	chr13:76209400-76210600	Active TSS	Skeletal Muscle Female	skeletal muscle
19	chr13:76209400-76210600	Active TSS	NHEK	skin
20	chr13:76209400-76210800	Active TSS	Primary T cells from cord blood	blood
21	chr13:76209400-76210800	Active TSS	Fetal Kidney	kidney
22	chr13:76209400-76210800	Active TSS	Pancreas	Pancrea
23	chr13:76209400-76211000	Active TSS	Brain Inferior Temporal Lobe	brain
24	chr13:76209400-76211400	Active TSS	H9 Cell Line	embryonic stem cell
25	chr13:76209400-76211400	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr13:76209400-76211600	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
27	chr13:76209400-76211600	Active TSS	Ovary	ovary
28	chr13:76209400-76211800	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
29	chr13:76209400-76211800	Active TSS	Fetal Lung	lung
30	chr13:76209400-76212000	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr13:76209400-76212200	Active TSS	Aorta	Aorta
32	chr13:76209600-76210600	Active TSS	Primary T helper cells fromperipheralblood	blood
33	chr13:76209600-76210600	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
34	chr13:76209600-76210600	Active TSS	Primary mononuclear cells fromperipheralblood	Blood
35	chr13:76209600-76210600	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
36	chr13:76209600-76210600	Active TSS	Duodenum Mucosa	Duodenum
37	chr13:76209600-76210600	Bivalent Enhancer	Fetal Brain Male	brain
38	chr13:76209600-76210600	Active TSS	Rectal Mucosa Donor 29	rectum
39	chr13:76209600-76210600	Active TSS	Hela-S3	cervix
40	chr13:76209600-76210600	Active TSS	HUVEC	blood vessel
41	chr13:76209600-76210800	Active TSS	iPS-15b Cell Line	embryonic stem cell
42	chr13:76209600-76210800	Active TSS	Primary T helper memory cells from peripheral blood 1	blood
43	chr13:76209600-76210800	Active TSS	Primary T helper cells PMA-I stimulated	--
44	chr13:76209600-76210800	Active TSS	Primary T killer naive cells fromperipheralblood	blood
45	chr13:76209600-76210800	Active TSS	Brain Angular Gyrus	brain
46	chr13:76209600-76211000	Active TSS	Brain Cingulate Gyrus	brain
47	chr13:76209600-76211000	Bivalent/Poised TSS	Fetal Stomach	stomach
48	chr13:76209600-76211000	Active TSS	Placenta Amnion	Placenta Amnion
49	chr13:76209600-76211200	Flanking Active TSS	Primary hematopoietic stem cells	blood
50	chr13:76209600-76211200	Active TSS	Primary T helper naive cells from peripheral blood	blood

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