Variant report

Variant	rs552865482
Chromosome Location	chr7:145813885-145813886
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv889384	chr7:145541783-146239545	Genic enhancers Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1023861	chr7:145606069-145910049	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv539170	chr7:145606069-145910049	Active TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Weak transcription Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1020950	chr7:145683419-146264304	Enhancers Bivalent/Poised TSS Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv981604	chr7:145773003-145935052	Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Enhancers Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv608927	chr7:145803095-145882001	Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv817332	chr7:145811034-145829299	Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv933481	chr7:145813559-145814093	Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers ZNF genes & repeats Weak transcription	n/a	n/a	inside rSNPs	diseases
9	nsv933952	chr7:145813563-145813901	Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
10	nsv933848	chr7:145813618-145813901	Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS Enhancers Bivalent Enhancer	n/a	n/a	inside rSNPs	diseases
11	nsv933002	chr7:145813618-145814093	Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:100 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:145812200-145815200	Active TSS	Brain Angular Gyrus	brain
2	chr7:145812400-145815200	Active TSS	Fetal Brain Female	brain
3	chr7:145812600-145814000	Active TSS	iPS-20b Cell Line	embryonic stem cell
4	chr7:145812600-145814000	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr7:145812600-145814000	Active TSS	Brain Cingulate Gyrus	brain
6	chr7:145812600-145814000	Active TSS	Fetal Brain Male	brain
7	chr7:145812600-145814200	Active TSS	ES-WA7 Cell Line	embryonic stem cell
8	chr7:145812600-145814200	Active TSS	iPS-18 Cell Line	embryonic stem cell
9	chr7:145812600-145814200	Bivalent/Poised TSS	Pancreatic Islets	Pancreatic Islet
10	chr7:145812600-145814200	Active TSS	Rectal Mucosa Donor 29	rectum
11	chr7:145812600-145814400	Active TSS	H9 Cell Line	embryonic stem cell
12	chr7:145812600-145814600	Active TSS	ES-I3 Cell Line	embryonic stem cell
13	chr7:145812800-145814000	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr7:145812800-145814000	Active TSS	iPS-15b Cell Line	embryonic stem cell
15	chr7:145812800-145814000	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr7:145812800-145814000	Bivalent/Poised TSS	Primary T cells from cord blood	blood
17	chr7:145812800-145814000	Active TSS	Colonic Mucosa	Colon
18	chr7:145812800-145814200	Active TSS	HUES48 Cell Line	embryonic stem cell
19	chr7:145812800-145814200	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr7:145812800-145814200	Flanking Active TSS	Ovary	ovary
21	chr7:145812800-145814200	Flanking Active TSS	Pancreas	Pancrea
22	chr7:145812800-145814400	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
23	chr7:145812800-145814400	Enhancers	Spleen	Spleen
24	chr7:145812800-145814600	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
25	chr7:145812800-145814800	Bivalent/Poised TSS	Fetal Intestine Small	intestine
26	chr7:145812800-145815000	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr7:145812800-145815400	Active TSS	Brain Germinal Matrix	brain
28	chr7:145812800-145815400	Active TSS	Fetal Kidney	kidney
29	chr7:145813000-145814000	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
30	chr7:145813000-145814000	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr7:145813000-145814000	Flanking Bivalent TSS/Enh	Breast Myoepithelial Primary Cells	Breast
32	chr7:145813000-145814000	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
33	chr7:145813000-145814000	Active TSS	Muscle Satellite Cultured Cells	--
34	chr7:145813000-145814000	ZNF genes & repeats	Foreskin Fibroblast Primary Cells skin02	Skin
35	chr7:145813000-145814000	Flanking Active TSS	Adipose Nuclei	Adipose
36	chr7:145813000-145814000	Bivalent/Poised TSS	NHEK	skin
37	chr7:145813000-145814200	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
38	chr7:145813000-145814200	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr7:145813000-145814200	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin03	Skin
40	chr7:145813000-145814200	Flanking Bivalent TSS/Enh	Foreskin Melanocyte Primary Cells skin03	Skin
41	chr7:145813000-145814200	Bivalent/Poised TSS	Fetal Intestine Large	intestine
42	chr7:145813000-145814200	Active TSS	Fetal Lung	lung
43	chr7:145813000-145814200	Enhancers	Placenta	Placenta
44	chr7:145813000-145814200	Active TSS	HSMMtube	muscle
45	chr7:145813000-145814400	Active TSS	Rectal Smooth Muscle	rectum
46	chr7:145813000-145814400	Active TSS	Osteobl	bone
47	chr7:145813200-145814200	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
48	chr7:145813400-145814000	Flanking Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
49	chr7:145813400-145814000	Flanking Bivalent TSS/Enh	Primary mononuclear cells fromperipheralblood	Blood
50	chr7:145813400-145814000	Flanking Active TSS	Stomach Smooth Muscle	stomach

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