Variant report

Variant	rs552875503
Chromosome Location	chr6:167161887-167161888
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:167160489..167162374-chr6:167163032..167165986,2	K562	blood:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:30 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3490076	chr6:166727901-167306743	Strong transcription Weak transcription Flanking Active TSS Genic enhancers Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	25 gene(s)	inside rSNPs	diseases
2	esv3490077	chr6:166727901-167306743	Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	25 gene(s)	inside rSNPs	diseases
3	nsv605260	chr6:166984094-167455139	Enhancers Strong transcription Weak transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
4	nsv432984	chr6:167018915-167181613	Bivalent Enhancer Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv482478	chr6:167071366-167265821	Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
6	nsv1019381	chr6:167090236-167558598	Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases
7	nsv538541	chr6:167090236-167558598	Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases
8	nsv1022866	chr6:167108740-167345629	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
9	esv1808159	chr6:167151463-167163093	Weak transcription Enhancers Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv482525	chr6:167151805-167324406	Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
11	esv1792808	chr6:167155187-167164571	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
12	nsv605261	chr6:167156675-167163207	Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
13	esv3406220	chr6:167160987-167164535	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
14	esv3491979	chr6:167161262-167164310	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
15	nsv605262	chr6:167161571-167162918	Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
16	esv1797660	chr6:167161571-167163093	Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
17	esv1799598	chr6:167161571-167163093	Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
18	esv1806327	chr6:167161571-167163093	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Weak transcription Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
19	nsv605263	chr6:167161571-167163093	Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
20	nsv605264	chr6:167161571-167163148	Weak transcription Enhancers Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases
21	nsv605265	chr6:167161571-167163207	Weak transcription Enhancers Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases
22	esv1801953	chr6:167161571-167164571	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
23	nsv605266	chr6:167161571-167164571	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
24	esv1798769	chr6:167161571-167165786	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
25	nsv605267	chr6:167161571-167165786	Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
26	esv3491980	chr6:167161642-167164073	Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
27	esv12814	chr6:167161735-167163265	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
28	esv2507832	chr6:167161748-167163630	Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
29	esv3491981	chr6:167161759-167163542	Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
30	esv3491982	chr6:167161759-167163542	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:167157600-167163600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr6:167157600-167164200	Weak transcription	Fetal Kidney	kidney
3	chr6:167157800-167163200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr6:167157800-167163800	Weak transcription	Brain Anterior Caudate	brain
5	chr6:167157800-167163800	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr6:167157800-167164200	Weak transcription	HSMM	muscle
7	chr6:167158200-167163000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr6:167160000-167164600	Weak transcription	HSMMtube	muscle
9	chr6:167160400-167162000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr6:167160600-167162000	Enhancers	H1 Cell Line	embryonic stem cell
11	chr6:167160600-167162000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
12	chr6:167160800-167162000	Enhancers	iPS-18 Cell Line	embryonic stem cell
13	chr6:167160800-167162000	Enhancers	Primary neutrophils fromperipheralblood	blood
14	chr6:167161000-167162000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr6:167161000-167162000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr6:167161000-167162000	Enhancers	HUES6 Cell Line	embryonic stem cell
17	chr6:167161000-167162000	Bivalent Enhancer	Primary B cells from peripheral blood	blood
18	chr6:167161200-167162000	Enhancers	HUES48 Cell Line	embryonic stem cell
19	chr6:167161200-167162000	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr6:167161200-167162000	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
21	chr6:167161200-167162000	Enhancers	Fetal Thymus	thymus
22	chr6:167161400-167162000	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr6:167161400-167162000	Enhancers	Primary hematopoietic stem cells	blood
24	chr6:167161400-167162000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
25	chr6:167161400-167162000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr6:167161600-167162000	Enhancers	Muscle Satellite Cultured Cells	--
27	chr6:167161600-167162000	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
28	chr6:167161600-167162000	Flanking Bivalent TSS/Enh	Fetal Muscle Trunk	muscle
29	chr6:167161600-167162000	Bivalent Enhancer	Fetal Stomach	stomach
30	chr6:167161600-167162200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
31	chr6:167161600-167163200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr6:167161600-167163400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
33	chr6:167161600-167164600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
34	chr6:167161800-167162000	Enhancers	Primary B cells from cord blood	blood
35	chr6:167161800-167162000	Flanking Bivalent TSS/Enh	Foreskin Melanocyte Primary Cells skin03	Skin
36	chr6:167161800-167162000	Enhancers	Brain Inferior Temporal Lobe	brain
37	chr6:167161800-167163200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
38	chr6:167161800-167163200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
39	chr6:167161800-167163400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
40	chr6:167161800-167163400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
41	chr6:167161800-167163400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
42	chr6:167161800-167163400	Weak transcription	NH-A	brain
43	chr6:167161800-167163600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
44	chr6:167161800-167164000	Weak transcription	HUES64 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links