Variant report

Variant	rs552885675
Chromosome Location	chr20:25688047-25688048
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv912834	chr20:25615272-25756336	Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv1056288	chr20:25662941-25744711	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv1057618	chr20:25665455-25744711	Flanking Active TSS Strong transcription Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv525033	chr20:25688001-25730968	ZNF genes & repeats Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:25677800-25701000	Weak transcription	Pancreas	Pancrea
2	chr20:25686600-25688800	Enhancers	Primary T helper cells fromperipheralblood	blood
3	chr20:25686800-25688400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
4	chr20:25687000-25688400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
5	chr20:25687000-25688600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
6	chr20:25687000-25688800	Enhancers	Primary T killer memory cells from peripheral blood	blood
7	chr20:25687000-25689000	Enhancers	Primary T helper cells PMA-I stimulated	--
8	chr20:25687400-25688200	Enhancers	Primary T cells from cord blood	blood
9	chr20:25687400-25689000	Enhancers	GM12878-XiMat	blood
10	chr20:25687600-25688600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
11	chr20:25687800-25688800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
12	chr20:25687800-25695800	Weak transcription	Gastric	stomach

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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