Variant report

Variant rs552887117
Chromosome Location chr9:685212-685213
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:88 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr9:653400-698000 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
2 chr9:670800-706800 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
3 chr9:674400-693200 Weak transcription Primary T cells from cord blood blood
4 chr9:677800-689400 Weak transcription Fetal Muscle Trunk muscle
5 chr9:678000-688000 Weak transcription Gastric stomach
6 chr9:678000-695200 Weak transcription Colonic Mucosa Colon
7 chr9:680800-692800 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
8 chr9:682600-686800 Enhancers Fetal Heart heart
9 chr9:682600-687600 Flanking Active TSS HUVEC blood vessel
10 chr9:682800-685600 Enhancers ES-I3 Cell Line embryonic stem cell
11 chr9:682800-687200 Enhancers Brain Dorsolateral Prefrontal Cortex brain
12 chr9:682800-688000 Enhancers Skeletal Muscle Female skeletal muscle
13 chr9:682800-696800 Enhancers Placenta Amnion Placenta Amnion
14 chr9:683000-685400 Enhancers hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
15 chr9:683000-685800 Active TSS Liver Liver
16 chr9:683000-686800 Enhancers Brain Cingulate Gyrus brain
17 chr9:683000-688000 Active TSS Aorta Aorta
18 chr9:683200-685800 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
19 chr9:683200-685800 Enhancers iPS-15b Cell Line embryonic stem cell
20 chr9:683200-685800 Weak transcription Left Ventricle heart
21 chr9:683200-686200 Weak transcription Lung lung
22 chr9:683200-687400 Enhancers Foreskin Melanocyte Primary Cells skin03 Skin
23 chr9:683400-686200 Enhancers A549 lung
24 chr9:683600-686600 Weak transcription Rectal Mucosa Donor 29 rectum
25 chr9:683600-692000 Weak transcription Duodenum Mucosa Duodenum
26 chr9:683600-694600 Weak transcription Sigmoid Colon Sigmoid Colon
27 chr9:683800-685600 Enhancers Right Ventricle heart
28 chr9:683800-685800 Enhancers Duodenum Smooth Muscle Duodenum
29 chr9:683800-687200 Flanking Active TSS Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
30 chr9:683800-689000 Enhancers Placenta Placenta
31 chr9:684000-685400 Flanking Active TSS Ganglion Eminence derived primary cultured neurospheres brain
32 chr9:684000-686000 Flanking Active TSS Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
33 chr9:684000-687400 Enhancers Breast Myoepithelial Primary Cells Breast
34 chr9:684000-687400 Flanking Active TSS Muscle Satellite Cultured Cells --
35 chr9:684000-687400 Enhancers Brain Angular Gyrus brain
36 chr9:684200-685400 Active TSS Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
37 chr9:684200-685600 Active TSS Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
38 chr9:684400-685600 Active TSS Colon Smooth Muscle Colon
39 chr9:684400-686600 Weak transcription Rectal Mucosa Donor 31 rectum
40 chr9:684400-688200 Enhancers Stomach Mucosa stomach
41 chr9:684600-685400 Active TSS Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
42 chr9:684600-685400 Active TSS Foreskin Keratinocyte Primary Cells skin03 Skin
43 chr9:684600-686000 Enhancers Fetal Brain Male brain
44 chr9:684600-687000 Enhancers Fetal Intestine Large intestine
45 chr9:684600-690400 Weak transcription H9 Cell Line embryonic stem cell
46 chr9:684600-692800 Weak transcription Ovary ovary
47 chr9:684800-685400 Active TSS HMEC breast
48 chr9:684800-685400 Active TSS NH-A brain
49 chr9:684800-685400 Active TSS NHDF-Ad bronchial
50 chr9:684800-685400 Active TSS Osteobl bone

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