Variant report

Variant	rs552945235
Chromosome Location	chr11:35037197-35037198
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045837	chr11:34893992-35395190	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
2	nsv430371	chr11:34975067-35111292	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	esv1826391	chr11:35000983-35098193	Enhancers Flanking Active TSS Strong transcription Weak transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
4	nsv897215	chr11:35009233-35048359	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats	Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases
5	nsv540999	chr11:35021936-35185471	Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
6	esv2758263	chr11:35029933-35226784	Genic enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
7	esv2759818	chr11:35029933-35238578	Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
8	nsv982935	chr11:35036919-35042571	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:35028400-35039600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr11:35028600-35051600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr11:35030000-35037400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr11:35032200-35037600	Weak transcription	Fetal Intestine Large	intestine
5	chr11:35032800-35037800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr11:35033000-35039200	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr11:35033000-35039200	Weak transcription	HepG2	liver
8	chr11:35033000-35039400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr11:35033200-35043400	Weak transcription	Skeletal Muscle Male	skeletal muscle
10	chr11:35033600-35051200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr11:35034800-35037200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr11:35035400-35037200	Enhancers	Primary T helper cells PMA-I stimulated	--
13	chr11:35035400-35039400	Weak transcription	Pancreas	Pancrea
14	chr11:35035600-35039200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
15	chr11:35035800-35037600	Weak transcription	Stomach Mucosa	stomach
16	chr11:35036000-35037200	Weak transcription	Sigmoid Colon	Sigmoid Colon
17	chr11:35036000-35037800	Weak transcription	Rectal Mucosa Donor 31	rectum
18	chr11:35036000-35038000	Enhancers	NHDF-Ad	bronchial
19	chr11:35036000-35038400	Weak transcription	Rectal Mucosa Donor 29	rectum
20	chr11:35036000-35038600	Weak transcription	Duodenum Mucosa	Duodenum
21	chr11:35036000-35039000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr11:35036200-35037200	Weak transcription	Primary T cells from cord blood	blood
23	chr11:35036200-35037200	Weak transcription	Fetal Lung	lung
24	chr11:35036200-35039200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
25	chr11:35036200-35041800	Weak transcription	Spleen	Spleen
26	chr11:35036200-35043000	Weak transcription	HSMMtube	muscle
27	chr11:35036400-35039000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr11:35036600-35037200	Enhancers	Fetal Muscle Leg	muscle
29	chr11:35036600-35039200	Weak transcription	Osteobl	bone
30	chr11:35037000-35037200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
31	chr11:35037000-35037200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
32	chr11:35037000-35037200	Enhancers	Fetal Stomach	stomach

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