Variant report

Variant	rs552992281
Chromosome Location	chr1:76705866-76705867
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv870621	chr1:76620313-76997071	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv1008763	chr1:76692057-76723417	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv1001452	chr1:76692057-76724652	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv546584	chr1:76693367-76721164	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv523526	chr1:76695356-76721164	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv1499	chr1:76704981-76749688	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:76695600-76708200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr1:76697000-76708200	Weak transcription	Fetal Lung	lung
3	chr1:76702800-76706400	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr1:76703000-76706200	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr1:76703200-76706400	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr1:76703200-76707000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr1:76703400-76706200	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr1:76703400-76706400	Enhancers	Hela-S3	cervix
9	chr1:76703800-76706200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr1:76703800-76707000	Enhancers	Brain Substantia Nigra	brain
11	chr1:76704200-76706600	Enhancers	HUES6 Cell Line	embryonic stem cell
12	chr1:76704400-76706400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr1:76704600-76706400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr1:76704600-76706400	Enhancers	Fetal Thymus	thymus
15	chr1:76705000-76706400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
16	chr1:76705000-76706400	Weak transcription	Brain Anterior Caudate	brain
17	chr1:76705000-76706600	Enhancers	Primary B cells from cord blood	blood
18	chr1:76705000-76707200	Weak transcription	HUVEC	blood vessel
19	chr1:76705000-76712800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr1:76705200-76706400	Enhancers	Primary B cells from peripheral blood	blood
21	chr1:76705200-76706600	Enhancers	Brain Hippocampus Middle	brain
22	chr1:76705200-76707200	Enhancers	Primary hematopoietic stem cells short term culture	blood
23	chr1:76705400-76707400	Enhancers	Monocytes-CD14+_RO01746	blood
24	chr1:76705400-76707800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr1:76705600-76706400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
26	chr1:76705600-76706400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr1:76705600-76706400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr1:76705600-76712800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
29	chr1:76705600-76712800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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