Variant report

Variant	rs553053486
Chromosome Location	chr1:195797667-195797668
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv872937	chr1:195493538-195849028	Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv1007203	chr1:195672857-195902360	Enhancers Active TSS Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv872941	chr1:195770204-195820337	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv1014402	chr1:195792089-195877256	Enhancers Active TSS Weak transcription Flanking Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases
5	esv3406540	chr1:195794129-195798427	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv1815602	chr1:195796224-195830040	Enhancers Active TSS Weak transcription Flanking Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases
7	esv2762212	chr1:195797081-195820890	Enhancers Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:195794200-195800400	Weak transcription	HUES6 Cell Line	embryonic stem cell
2	chr1:195794600-195797800	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr1:195796800-195798200	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr1:195796800-195798400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr1:195797200-195797800	Enhancers	iPS-20b Cell Line	embryonic stem cell
6	chr1:195797400-195797800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr1:195797400-195797800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr1:195797400-195797800	Enhancers	HMEC	breast
9	chr1:195797400-195798000	Enhancers	iPS-18 Cell Line	embryonic stem cell
10	chr1:195797400-195798200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
11	chr1:195797400-195798200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
12	chr1:195797400-195798600	Enhancers	ES-I3 Cell Line	embryonic stem cell
13	chr1:195797600-195798200	Enhancers	HUES48 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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