Variant report

Variant	rs553068576
Chromosome Location	chr18:24540755-24540756
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833600	chr18:24473894-24681019	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv909472	chr18:24479960-24614192	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1067103	chr18:24524011-24760469	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv543668	chr18:24524011-24760469	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	esv1816690	chr18:24539782-24572241	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:24537400-24545000	Weak transcription	Brain Anterior Caudate	brain
2	chr18:24537600-24543600	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr18:24537800-24541000	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr18:24538600-24543000	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr18:24538800-24540800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr18:24539000-24541000	Weak transcription	Ovary	ovary
7	chr18:24539400-24540800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr18:24540400-24540800	Enhancers	Colon Smooth Muscle	Colon
9	chr18:24540400-24540800	Enhancers	Fetal Heart	heart
10	chr18:24540600-24541000	Enhancers	HMEC	breast
11	chr18:24540600-24541200	Enhancers	Breast Myoepithelial Primary Cells	Breast
12	chr18:24540600-24542000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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