Variant report

Variant	rs553284702
Chromosome Location	chr13:64412208-64412209
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:61)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr13:64412172-64412222	T-47D	breast:	n/a
2	chr13:64412172-64412222	HPAEpiC	pulmonary alveolar:	n/a
3	chr13:64412172-64412222	NHBE	bronchial:	n/a
4	chr13:64412172-64412222	Caco-2	colon:	n/a
5	chr13:64412172-64412222	NHDF-neo	bronchial:	n/a
6	chr13:64412172-64412222	HIPEpiC	eye:	n/a
7	chr13:64412172-64412222	HUVEC	blood vessel:	n/a
8	chr13:64412172-64412222	NH-A	brain:	n/a
9	chr13:64412172-64412222	Hepatocyte	liver:	n/a
10	chr13:64412172-64412222	BJ	skin:	n/a
11	chr13:64412172-64412222	AG10803	skin:	n/a
12	chr13:64412172-64412222	RPTEC	kidney:	n/a
13	chr13:64412172-64412222	MCF-7	breast:	n/a
14	chr13:64412172-64412222	GM06990	blood:	n/a
15	chr13:64412172-64412222	AG09309	skin:	n/a
16	chr13:64412172-64412222	GM12878	blood:	n/a
17	chr13:64412172-64412222	HCT-116	colon:	n/a
18	chr13:64412172-64412222	K562	blood:	n/a
19	chr13:64412172-64412222	HNPCEpiC	eye:	n/a
20	chr13:64412172-64412222	A549	lung:	n/a
21	chr13:64412172-64412222	NT2-D1	testis:	n/a
22	chr13:64412172-64412222	HEK293	kidney:	embryo
23	chr13:64412172-64412222	PFSK-1	brain:	n/a
24	chr13:64412172-64412222	CMK	blood:	n/a
25	chr13:64412172-64412222	HCM	heart:	n/a
26	chr13:64412172-64412222	Hela-S3	cervix:	n/a
27	chr13:64412172-64412222	HEEpiC	esophagus:	n/a
28	chr13:64412172-64412222	GM19239	blood:	n/a
29	chr13:64412172-64412222	LNCaP	prostate:	n/a
30	chr13:64412172-64412222	GM12891	blood:	n/a
31	chr13:64412172-64412222	SK-N-MC	brain:	n/a
32	chr13:64412172-64412222	MCF10A-Er-Src	breast:	n/a
33	chr13:64412172-64412222	HepG2	liver:	n/a
34	chr13:64412172-64412222	IMR90	lung:	fetal
35	chr13:64412172-64412222	HMEC	breast:	n/a
36	chr13:64412172-64412222	GM12892	blood:	n/a
37	chr13:64412172-64412222	HL-60	blood:	n/a
38	chr13:64412172-64412222	HRPEpiC	eye:	n/a
39	chr13:64412172-64412222	H1-hESC	embryonic stem cell:	embryo
40	chr13:64412172-64412222	PrEC	prostate:	n/a
41	chr13:64412172-64412222	AG04450	lung:	fetal
42	chr13:64412172-64412222	HCF	heart:	n/a
43	chr13:64412172-64412222	NB4	blood:	n/a
44	chr13:64412172-64412222	BE2_C	brain:	n/a
45	chr13:64412172-64412222	SK-N-SH	brain:	n/a
46	chr13:64412172-64412222	ovcar-3	ovarian:	n/a
47	chr13:64412172-64412222	HRCEpiC	kidney:	n/a
48	chr13:64412172-64412222	SKMC	muscle:	n/a
49	chr13:64412172-64412222	HCPEpiC	choroid plexus:	n/a
50	chr13:64412172-64412222	AG04449	skin:	fetal

No data

Variant related genes	Relation type
ENSG00000272299	CpG island

Extended variants
information (count: 18 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:18 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042265	chr13:63945130-64471230	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	esv2756457	chr13:64244499-64497199	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv870276	chr13:64287557-64424570	Weak transcription Enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv900323	chr13:64290980-64513203	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	nsv1051772	chr13:64301592-64419179	Enhancers ZNF genes & repeats Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
6	nsv1042787	chr13:64301592-64419543	Enhancers ZNF genes & repeats Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
7	esv2754198	chr13:64303507-64424251	Weak transcription Enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
8	nsv1046923	chr13:64321869-64419179	ZNF genes & repeats Weak transcription Enhancers Active TSS	TF binding region CpG island lncRNA	6 gene(s)	inside rSNPs	diseases
9	nsv1048045	chr13:64321869-64419543	Enhancers ZNF genes & repeats Active TSS Weak transcription	TF binding region CpG island lncRNA	6 gene(s)	inside rSNPs	diseases
10	nsv1036453	chr13:64329019-64430033	Enhancers ZNF genes & repeats Weak transcription Active TSS	TF binding region CpG island lncRNA	5 gene(s)	inside rSNPs	diseases
11	nsv1044100	chr13:64344469-64419179	Weak transcription Enhancers ZNF genes & repeats Active TSS	TF binding region CpG island lncRNA	5 gene(s)	inside rSNPs	diseases
12	nsv1046914	chr13:64344469-64419543	Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island lncRNA	5 gene(s)	inside rSNPs	diseases
13	nsv900331	chr13:64346536-64450375	Weak transcription Enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
14	nsv832633	chr13:64385305-64521487	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
15	nsv1046038	chr13:64405310-64500692	ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
16	nsv976127	chr13:64407800-64424929	ZNF genes & repeats Enhancers Weak transcription	TF binding region CpG island lncRNA	3 gene(s)	inside rSNPs	diseases
17	nsv900332	chr13:64411616-64856866	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
18	esv3365362	chr13:64412101-64414799	Inactive region	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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