Variant report

Variant	rs553364758
Chromosome Location	chr14:65708574-65708575
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr14:65707546..65709332-chr14:65714126..65717111,2	K562	blood:
2	chr14:65691185..65703550-chr14:65706694..65715001,23	MCF-7	breast:
3	chr14:65703752..65707201-chr14:65707603..65710596,4	MCF-7	breast:
4	chr14:65708443..65711390-chr14:65727270..65732025,4	MCF-7	breast:
5	chr14:65707878..65709895-chr14:65801423..65803291,2	MCF-7	breast:
6	chr14:65583338..65585299-chr14:65708352..65712057,3	MCF-7	breast:
7	chr14:65708389..65714331-chr14:65715596..65724154,17	MCF-7	breast:
8	chr14:65708249..65716123-chr14:65876687..65882798,15	MCF-7	breast:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-MAX-2	chr14:65708499-65709934	XLOC_011054

No data

Variant related genes	Relation type
ENSG00000258878	Chromatin interaction
ENSG00000033170	Chromatin interaction
ENSG00000266740	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832817	chr14:65637069-65810406	Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases
2	nsv564933	chr14:65667546-65710580	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv564934	chr14:65706758-65712872	Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv832818	chr14:65706859-65882320	Enhancers Strong transcription Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases
5	nsv976853	chr14:65708032-65723266	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65697200-65746800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr14:65697400-65710600	Weak transcription	Primary T helper cells PMA-I stimulated	--
3	chr14:65703200-65708600	Enhancers	Fetal Intestine Large	intestine
4	chr14:65703400-65711800	Enhancers	Fetal Intestine Small	intestine
5	chr14:65704800-65710400	Weak transcription	Small Intestine	intestine
6	chr14:65705000-65710400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
7	chr14:65705000-65710600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr14:65706000-65710600	Weak transcription	NHEK	skin
9	chr14:65706400-65709600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr14:65706400-65710000	Weak transcription	Gastric	stomach
11	chr14:65706400-65710000	Weak transcription	K562	blood
12	chr14:65706600-65710400	Weak transcription	Pancreas	Pancrea
13	chr14:65706600-65710400	Weak transcription	HMEC	breast
14	chr14:65706600-65710400	Weak transcription	HSMM	muscle
15	chr14:65706600-65710600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
16	chr14:65706600-65718200	Weak transcription	Spleen	Spleen
17	chr14:65706800-65709200	Weak transcription	NH-A	brain
18	chr14:65706800-65709800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr14:65706800-65709800	Weak transcription	NHLF	lung
20	chr14:65706800-65710400	Weak transcription	Muscle Satellite Cultured Cells	--
21	chr14:65706800-65710600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr14:65706800-65710600	Weak transcription	Osteobl	bone
23	chr14:65706800-65711000	Weak transcription	Hela-S3	cervix
24	chr14:65706800-65716200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr14:65707000-65709200	Weak transcription	Stomach Mucosa	stomach
26	chr14:65707000-65709600	Weak transcription	Rectal Mucosa Donor 31	rectum
27	chr14:65707000-65709800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr14:65707000-65709800	Weak transcription	Placenta	Placenta
29	chr14:65707000-65709800	Weak transcription	Sigmoid Colon	Sigmoid Colon
30	chr14:65707000-65710200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
31	chr14:65707000-65710400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
32	chr14:65707000-65710400	Weak transcription	NHDF-Ad	bronchial
33	chr14:65707000-65710600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
34	chr14:65707000-65710600	Weak transcription	Duodenum Mucosa	Duodenum
35	chr14:65707000-65710800	Weak transcription	Rectal Mucosa Donor 29	rectum
36	chr14:65707000-65716200	Weak transcription	Brain Anterior Caudate	brain
37	chr14:65707200-65708800	Weak transcription	HUVEC	blood vessel
38	chr14:65707600-65708600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
39	chr14:65708000-65709400	Enhancers	HepG2	liver
40	chr14:65708200-65709200	Enhancers	A549	lung
41	chr14:65708400-65709000	Enhancers	GM12878-XiMat	blood
42	chr14:65708400-65709200	Weak transcription	Primary B cells from peripheral blood	blood
43	chr14:65708400-65710400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
44	chr14:65708400-65710400	Weak transcription	Fetal Thymus	thymus
45	chr14:65708400-65716200	Weak transcription	Brain Hippocampus Middle	brain
46	chr14:65708400-65716200	Weak transcription	Brain Substantia Nigra	brain

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