The 2.0 version of rSNPBase

Variant report

Variant rs553687
Chromosome Location chr2:20990167-20990168
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:102 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr2:20926400-20995000 Weak transcription Hela-S3 cervix
2 chr2:20951800-20993200 Weak transcription Colon Smooth Muscle Colon
3 chr2:20952800-20990400 Weak transcription Rectal Smooth Muscle rectum
4 chr2:20954200-21001200 Weak transcription NH-A brain
5 chr2:20958600-20995800 Weak transcription HMEC breast
6 chr2:20959000-20995400 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
7 chr2:20959200-20997000 Weak transcription Brain Substantia Nigra brain
8 chr2:20960800-20996200 Weak transcription HSMMtube muscle
9 chr2:20964000-20996000 Weak transcription Osteobl bone
10 chr2:20965800-20993200 Weak transcription Fetal Brain Female brain
11 chr2:20965800-21003400 Weak transcription ES-I3 Cell Line embryonic stem cell
12 chr2:20968400-20993800 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
13 chr2:20968400-21003000 Weak transcription Pancreas Pancrea
14 chr2:20968600-20993600 Weak transcription Cortex derived primary cultured neurospheres brain
15 chr2:20968600-20996200 Weak transcription Muscle Satellite Cultured Cells --
16 chr2:20968800-20992600 Weak transcription Spleen Spleen
17 chr2:20969000-20994000 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
18 chr2:20969000-21003000 Weak transcription Gastric stomach
19 chr2:20970800-20992800 Weak transcription Brain Inferior Temporal Lobe brain
20 chr2:20970800-20996400 Weak transcription Brain Anterior Caudate brain
21 chr2:20973200-21003000 Weak transcription Primary T killer naive cells fromperipheralblood blood
22 chr2:20974600-20991000 Weak transcription Brain Cingulate Gyrus brain
23 chr2:20974600-20993800 Weak transcription Primary T helper naive cells fromperipheralblood blood
24 chr2:20974600-20994000 Weak transcription HUES6 Cell Line embryonic stem cell
25 chr2:20974600-21021800 Weak transcription Thymus Thymus
26 chr2:20974800-21000200 Weak transcription HSMM muscle
27 chr2:20975000-20993200 Weak transcription Fetal Kidney kidney
28 chr2:20975000-20996200 Weak transcription HUES48 Cell Line embryonic stem cell
29 chr2:20980800-20997800 Weak transcription Placenta Amnion Placenta Amnion
30 chr2:20983000-20992600 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
31 chr2:20983400-20991600 Strong transcription H9 Derived Neuron Cultured Cells ES cell derived
32 chr2:20983400-20993400 Strong transcription Primary B cells from peripheral blood blood
33 chr2:20983400-20999000 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
34 chr2:20984200-20997000 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
35 chr2:20984600-20990600 Strong transcription Liver Liver
36 chr2:20984800-20996400 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
37 chr2:20986400-20991400 Strong transcription Primary T cells from cord blood blood
38 chr2:20986400-20991600 Strong transcription Monocytes-CD14+_RO01746 blood
39 chr2:20986800-20992800 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
40 chr2:20986800-20995800 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
41 chr2:20987000-20993800 Weak transcription A549 lung
42 chr2:20987000-20995800 Weak transcription Placenta Placenta
43 chr2:20987200-20991400 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
44 chr2:20987200-20997800 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
45 chr2:20987400-20997000 Weak transcription Brain Angular Gyrus brain
46 chr2:20987600-20991400 Strong transcription HepG2 liver
47 chr2:20987800-20991400 Strong transcription Primary hematopoietic stem cells short term culture blood
48 chr2:20988400-20990400 Strong transcription Stomach Smooth Muscle stomach
49 chr2:20988400-20990600 Strong transcription Sigmoid Colon Sigmoid Colon
50 chr2:20988400-20991000 Strong transcription Rectal Mucosa Donor 31 rectum

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Last update: Aug 31, 2015