Variant report

Variant	rs553705098
Chromosome Location	chr3:88050607-88050608
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877146	chr3:87983962-88159835	Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	12 gene(s)	inside rSNPs	diseases
2	nsv536635	chr3:88049304-88088520	Flanking Active TSS Weak transcription Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:88046800-88054400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
2	chr3:88048600-88054200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr3:88050000-88050800	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr3:88050400-88052400	Weak transcription	Liver	Liver
5	chr3:88050400-88054200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
6	chr3:88050400-88054400	Weak transcription	Primary T helper cells fromperipheralblood	blood
7	chr3:88050600-88050800	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr3:88050600-88050800	Flanking Active TSS	Pancreatic Islets	Pancreatic Islet
9	chr3:88050600-88050800	Active TSS	Monocytes-CD14+_RO01746	blood
10	chr3:88050600-88054000	Weak transcription	Primary T helper cells PMA-I stimulated	--
11	chr3:88050600-88054200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr3:88050600-88054200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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