Variant report

Variant	rs553722802
Chromosome Location	chr4:148517913-148517914
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028958	chr4:148377752-148793485	Weak transcription Strong transcription Enhancers Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv830110	chr4:148432125-148595119	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv428776	chr4:148432125-148595119	Enhancers Active TSS Weak transcription Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
4	esv13564	chr4:148515649-148519825	Weak transcription Enhancers	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a
5	nsv595653	chr4:148515669-148519339	Weak transcription Enhancers	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a
6	nsv595654	chr4:148515669-148519535	Enhancers Weak transcription	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a
7	esv1840088	chr4:148515669-148519763	Enhancers Weak transcription	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a
8	esv1829169	chr4:148515833-148519535	Enhancers Weak transcription	Chromatin interactive region	3 gene(s)	inside rSNPs	n/a
9	esv1832941	chr4:148515833-148519535	Enhancers Weak transcription	Chromatin interactive region	3 gene(s)	inside rSNPs	n/a
10	esv1845878	chr4:148515833-148519535	Enhancers Weak transcription	Chromatin interactive region	3 gene(s)	inside rSNPs	n/a
11	esv1849976	chr4:148515833-148519535	Enhancers Weak transcription	Chromatin interactive region	3 gene(s)	inside rSNPs	n/a
12	esv2763396	chr4:148516769-148535636	Enhancers Weak transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:148510200-148520800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr4:148512600-148518000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr4:148512600-148518000	Weak transcription	NHLF	lung
4	chr4:148512600-148518200	Weak transcription	Stomach Mucosa	stomach
5	chr4:148512800-148518000	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr4:148516000-148518000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr4:148517600-148518600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr4:148517800-148518400	Enhancers	A549	lung
9	chr4:148517800-148518600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr4:148517800-148518600	Enhancers	NHEK	skin
11	chr4:148517800-148518800	Enhancers	HMEC	breast
12	chr4:148517800-148519000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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