Variant report

Variant	rs553879471
Chromosome Location	chr20:24115360-24115361
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr20:24111886..24113648-chr20:24113789..24115599,2	MCF-7	breast:

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv9793	chr20:23939613-24734850	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	esv3328348	chr20:24095746-24285830	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	esv2755330	chr20:24114903-24130700	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:24111000-24117200	Enhancers	Placenta Amnion	Placenta Amnion
2	chr20:24111400-24117200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr20:24111400-24120400	Enhancers	Placenta	Placenta
4	chr20:24111600-24115800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr20:24111600-24119600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr20:24111800-24115600	Enhancers	HMEC	breast
7	chr20:24111800-24116400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr20:24113000-24117600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr20:24113200-24116000	Enhancers	NHEK	skin
10	chr20:24114400-24115400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr20:24114800-24115400	Enhancers	ES-I3 Cell Line	embryonic stem cell
12	chr20:24114800-24115400	Enhancers	Fetal Stomach	stomach
13	chr20:24114800-24115600	Enhancers	HUES6 Cell Line	embryonic stem cell
14	chr20:24114800-24115600	Enhancers	Esophagus	oesophagus
15	chr20:24114800-24115600	Enhancers	Fetal Muscle Leg	muscle
16	chr20:24114800-24115800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
17	chr20:24114800-24119800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
18	chr20:24115000-24115400	Enhancers	HUES48 Cell Line	embryonic stem cell
19	chr20:24115000-24115400	Enhancers	Fetal Muscle Trunk	muscle
20	chr20:24115000-24115600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
21	chr20:24115000-24116000	Weak transcription	Right Atrium	heart
22	chr20:24115200-24115600	Weak transcription	Pancreas	Pancrea
23	chr20:24115200-24116000	Weak transcription	Primary T cells fromperipheralblood	blood

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