Variant report

Variant	rs554465913
Chromosome Location	chr13:65352508-65352509
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 65 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:65 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv455914	chr13:64432922-65368490	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv561965	chr13:64432922-65368490	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	esv3367739	chr13:64805577-65549276	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1038150	chr13:65224379-65354892	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv1042755	chr13:65300441-65400043	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv561976	chr13:65339575-65353103	Enhancers Weak transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv561977	chr13:65339575-65353382	Weak transcription Enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv561978	chr13:65339575-65360698	Weak transcription Enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	nsv561979	chr13:65339575-65366000	Enhancers Weak transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
10	nsv561991	chr13:65342539-65352759	Enhancers Weak transcription	lncRNA	n/a	inside rSNPs	diseases
11	nsv561992	chr13:65342539-65352940	Weak transcription Enhancers	lncRNA	n/a	inside rSNPs	diseases
12	nsv561993	chr13:65342539-65352958	Enhancers Weak transcription	lncRNA	n/a	inside rSNPs	diseases
13	nsv561994	chr13:65342539-65353103	Weak transcription Enhancers	lncRNA	n/a	inside rSNPs	diseases
14	nsv561995	chr13:65342539-65353382	Weak transcription Enhancers	lncRNA	n/a	inside rSNPs	diseases
15	nsv561996	chr13:65342539-65360698	Weak transcription Enhancers	lncRNA	n/a	inside rSNPs	diseases
16	nsv561997	chr13:65342539-65360737	Enhancers Weak transcription	lncRNA	n/a	inside rSNPs	diseases
17	nsv562007	chr13:65342591-65352940	Enhancers Weak transcription	lncRNA	n/a	inside rSNPs	diseases
18	nsv562008	chr13:65342591-65352958	Enhancers Weak transcription	lncRNA	n/a	inside rSNPs	diseases
19	nsv562009	chr13:65342591-65353103	Enhancers Weak transcription	lncRNA	n/a	inside rSNPs	diseases
20	nsv562010	chr13:65342591-65353382	Weak transcription Enhancers	lncRNA	n/a	inside rSNPs	diseases
21	nsv562011	chr13:65342591-65360698	Enhancers Weak transcription	lncRNA	n/a	inside rSNPs	diseases
22	nsv562021	chr13:65342642-65353103	Enhancers Weak transcription	lncRNA	n/a	inside rSNPs	diseases
23	nsv562022	chr13:65342642-65353382	Enhancers Weak transcription	lncRNA	n/a	inside rSNPs	diseases
24	nsv562023	chr13:65342642-65360698	Enhancers Weak transcription	lncRNA	n/a	inside rSNPs	diseases
25	nsv562031	chr13:65342696-65352940	Weak transcription Enhancers	lncRNA	n/a	inside rSNPs	diseases
26	nsv562032	chr13:65342696-65352958	Weak transcription Enhancers	lncRNA	n/a	inside rSNPs	diseases
27	nsv562033	chr13:65342696-65353042	Weak transcription Enhancers	lncRNA	n/a	inside rSNPs	diseases
28	nsv562034	chr13:65342696-65353382	Enhancers Weak transcription	lncRNA	n/a	inside rSNPs	diseases
29	nsv562040	chr13:65342752-65352958	Weak transcription Enhancers	lncRNA	n/a	inside rSNPs	diseases
30	nsv562041	chr13:65342752-65353382	Enhancers Weak transcription	lncRNA	n/a	inside rSNPs	diseases
31	nsv562048	chr13:65342863-65353103	Weak transcription Enhancers	lncRNA	n/a	inside rSNPs	diseases
32	nsv562049	chr13:65342863-65353382	Enhancers Weak transcription	lncRNA	n/a	inside rSNPs	diseases
33	nsv562050	chr13:65342863-65360698	Enhancers Weak transcription	lncRNA	n/a	inside rSNPs	diseases
34	nsv562055	chr13:65343014-65353103	Enhancers Weak transcription	lncRNA	n/a	inside rSNPs	diseases
35	nsv562056	chr13:65343014-65353382	Enhancers Weak transcription	lncRNA	n/a	inside rSNPs	diseases
36	nsv562060	chr13:65343028-65353382	Enhancers Weak transcription	lncRNA	n/a	inside rSNPs	diseases
37	nsv562061	chr13:65343028-65360698	Enhancers Weak transcription	lncRNA	n/a	inside rSNPs	diseases
38	nsv562062	chr13:65343130-65353382	Enhancers Weak transcription	lncRNA	n/a	inside rSNPs	diseases
39	nsv562063	chr13:65343710-65352940	Enhancers	lncRNA	n/a	inside rSNPs	diseases
40	nsv562064	chr13:65343762-65353382	Enhancers	lncRNA	n/a	inside rSNPs	diseases
41	nsv562065	chr13:65343923-65353103	Enhancers	lncRNA	n/a	inside rSNPs	diseases
42	nsv562066	chr13:65343923-65353382	Enhancers	lncRNA	n/a	inside rSNPs	diseases
43	nsv562067	chr13:65350465-65353382	Enhancers	n/a	n/a	inside rSNPs	diseases
44	esv3518595	chr13:65351703-65353944	Enhancers	n/a	n/a	inside rSNPs	diseases
45	esv3518584	chr13:65352084-65353782	Enhancers	n/a	n/a	inside rSNPs	diseases
46	esv10864	chr13:65352104-65353482	Enhancers	n/a	n/a	inside rSNPs	diseases
47	esv3395620	chr13:65352154-65353700	Enhancers	n/a	n/a	inside rSNPs	diseases
48	esv3518573	chr13:65352177-65353685	Enhancers	n/a	n/a	inside rSNPs	diseases
49	esv3518606	chr13:65352177-65353685	Enhancers	n/a	n/a	inside rSNPs	diseases
50	nsv562068	chr13:65352237-65352940	Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:65351200-65353200	Enhancers	HUVEC	blood vessel
2	chr13:65352200-65352600	Enhancers	iPS-18 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links