Variant report

Variant	rs554528752
Chromosome Location	chr2:33665325-33665326
allele	A/C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1005435	chr2:33136117-33747159	Weak transcription Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
2	nsv535624	chr2:33136117-33747159	Weak transcription Enhancers Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
3	esv2762447	chr2:33643724-33674484	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv517737	chr2:33664350-33676440	Weak transcription Enhancers Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:33645200-33667800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr2:33659400-33667400	Weak transcription	Brain Hippocampus Middle	brain
3	chr2:33660600-33665600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr2:33661800-33667600	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr2:33662800-33667200	Weak transcription	Psoas Muscle	Psoas
6	chr2:33662800-33670200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
7	chr2:33663200-33667400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr2:33663200-33667400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr2:33663200-33667800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr2:33663200-33667800	Weak transcription	Skeletal Muscle Male	skeletal muscle
11	chr2:33663200-33668200	Weak transcription	Osteobl	bone
12	chr2:33663200-33671400	Weak transcription	Right Ventricle	heart
13	chr2:33663400-33665600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr2:33663400-33667600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr2:33663400-33667600	Weak transcription	HUVEC	blood vessel
16	chr2:33663600-33670200	Weak transcription	Fetal Muscle Leg	muscle
17	chr2:33663800-33665600	Enhancers	K562	blood
18	chr2:33664200-33667600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr2:33664600-33667600	Weak transcription	NHDF-Ad	bronchial
20	chr2:33664600-33668000	Weak transcription	Adipose Nuclei	Adipose
21	chr2:33664800-33666000	Weak transcription	Right Atrium	heart
22	chr2:33665000-33667000	Weak transcription	Fetal Muscle Trunk	muscle
23	chr2:33665000-33668800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr2:33665000-33669000	Weak transcription	Left Ventricle	heart
25	chr2:33665000-33670000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr2:33665200-33667800	Weak transcription	Fetal Heart	heart
27	chr2:33665200-33670000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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