Variant report

Variant	rs554623884
Chromosome Location	chr1:155732759-155732760
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:155730706..155733174-chr1:155733951..155736426,2	K562	blood:
2	chr1:155729870..155731926-chr1:155731964..155733488,2	MCF-7	breast:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529709	chr1:155154933-155757219	Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	450 gene(s)	inside rSNPs	diseases
2	esv33869	chr1:155223283-155917961	Flanking Active TSS Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	187 gene(s)	inside rSNPs	diseases
3	nsv428246	chr1:155558197-155785831	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
4	esv3436971	chr1:155618172-155733386	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
5	esv3338099	chr1:155618190-155733359	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
6	esv3423892	chr1:155664084-155901487	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
7	nsv946423	chr1:155732243-155737328	Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:155715400-155739200	Weak transcription	Fetal Heart	heart
2	chr1:155715400-155789200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr1:155715600-155764600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr1:155716000-155793400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr1:155716600-155781800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr1:155717200-155761000	Strong transcription	Fetal Stomach	stomach
7	chr1:155717400-155733400	Strong transcription	Brain Anterior Caudate	brain
8	chr1:155717400-155795800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr1:155717600-155733800	Strong transcription	Spleen	Spleen
10	chr1:155717600-155750200	Strong transcription	Primary T helper cells PMA-I stimulated	--
11	chr1:155720200-155732800	Strong transcription	Monocytes-CD14+_RO01746	blood
12	chr1:155720200-155732800	Strong transcription	Osteobl	bone
13	chr1:155720200-155733000	Strong transcription	Primary monocytes fromperipheralblood	blood
14	chr1:155720200-155733800	Strong transcription	Sigmoid Colon	Sigmoid Colon
15	chr1:155720200-155745400	Strong transcription	Fetal Muscle Leg	muscle
16	chr1:155720200-155748600	Strong transcription	HUES48 Cell Line	embryonic stem cell
17	chr1:155720200-155748800	Strong transcription	Duodenum Mucosa	Duodenum
18	chr1:155720200-155748800	Strong transcription	Rectal Mucosa Donor 29	rectum
19	chr1:155720200-155749000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
20	chr1:155720200-155749600	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
21	chr1:155720200-155750200	Strong transcription	Primary T cells from cord blood	blood
22	chr1:155720200-155750600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
23	chr1:155720200-155755800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
24	chr1:155720200-155756200	Strong transcription	Primary T helper cells fromperipheralblood	blood
25	chr1:155720200-155756600	Strong transcription	HUES6 Cell Line	embryonic stem cell
26	chr1:155720200-155798200	Strong transcription	Fetal Thymus	thymus
27	chr1:155720200-155803600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr1:155720400-155732800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr1:155720400-155732800	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr1:155720400-155733000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr1:155720400-155733000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr1:155720400-155733800	Strong transcription	Left Ventricle	heart
33	chr1:155720400-155743200	Strong transcription	Stomach Smooth Muscle	stomach
34	chr1:155720400-155743200	Strong transcription	Thymus	Thymus
35	chr1:155720400-155750200	Strong transcription	Adipose Nuclei	Adipose
36	chr1:155720400-155750400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
37	chr1:155720400-155750600	Strong transcription	Dnd41	blood
38	chr1:155720400-155755600	Strong transcription	Placenta	Placenta
39	chr1:155720400-155756400	Strong transcription	Liver	Liver
40	chr1:155720400-155760800	Strong transcription	Primary T cells fromperipheralblood	blood
41	chr1:155720400-155796800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
42	chr1:155720600-155732800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
43	chr1:155720600-155733400	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
44	chr1:155720600-155733400	Strong transcription	Brain Germinal Matrix	brain
45	chr1:155720600-155733400	Strong transcription	Rectal Mucosa Donor 31	rectum
46	chr1:155720600-155733600	Strong transcription	Skeletal Muscle Male	skeletal muscle
47	chr1:155720600-155733800	Strong transcription	Fetal Lung	lung
48	chr1:155720600-155735800	Strong transcription	Rectal Smooth Muscle	rectum
49	chr1:155720600-155743200	Strong transcription	Fetal Brain Female	brain
50	chr1:155720600-155743600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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