Variant report

Variant	rs554709765
Chromosome Location	chr3:119011867-119011868
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MXI1	chr3:119011830-119016982	SK-N-SH	brain:	n/a	n/a
2	E2F6	chr3:119011433-119011885	H1-hESC	embryonic stem cell:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr3:119011699..119014378-chr3:119015999..119019083,3	MCF-7	breast:
2	chr3:119009764..119012007-chr3:119036606..119039583,2	MCF-7	breast:
3	chr3:119011662..119015799-chr3:119040784..119043293,4	MCF-7	breast:

Variant related genes	Relation type
ARHGAP31	TF binding region
ENSG00000242829	Chromatin interaction
ENSG00000241155	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3487859	chr3:118570588-119419623	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
2	esv3487860	chr3:118570588-119419623	Strong transcription Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
3	nsv829694	chr3:119011488-119153579	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:74 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:119007800-119012400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr3:119008800-119012000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr3:119008800-119012600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr3:119008800-119012600	Weak transcription	Esophagus	oesophagus
5	chr3:119008800-119012800	Weak transcription	Spleen	Spleen
6	chr3:119009000-119012000	Weak transcription	Monocytes-CD14+_RO01746	blood
7	chr3:119010200-119012200	Weak transcription	Pancreatic Islets	Pancreatic Islet
8	chr3:119010400-119012400	Weak transcription	Fetal Intestine Large	intestine
9	chr3:119011000-119012000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
10	chr3:119011000-119012000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
11	chr3:119011000-119012200	Enhancers	Cortex derived primary cultured neurospheres	brain
12	chr3:119011000-119012200	Enhancers	Fetal Thymus	thymus
13	chr3:119011200-119012000	Enhancers	Primary T helper naive cells from peripheral blood	blood
14	chr3:119011200-119012000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
15	chr3:119011200-119012000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
16	chr3:119011200-119012000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr3:119011200-119012200	Bivalent Enhancer	ES-WA7 Cell Line	embryonic stem cell
18	chr3:119011200-119012400	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
19	chr3:119011200-119012400	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
20	chr3:119011200-119012400	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
21	chr3:119011200-119012400	Enhancers	Colon Smooth Muscle	Colon
22	chr3:119011400-119012000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr3:119011400-119012000	Enhancers	Lung	lung
24	chr3:119011400-119012200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
25	chr3:119011400-119012200	Enhancers	Adipose Nuclei	Adipose
26	chr3:119011400-119012200	Enhancers	Right Ventricle	heart
27	chr3:119011400-119012400	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
28	chr3:119011400-119012400	Enhancers	Primary B cells from peripheral blood	blood
29	chr3:119011400-119012400	Enhancers	Brain Hippocampus Middle	brain
30	chr3:119011400-119012400	Enhancers	Fetal Lung	lung
31	chr3:119011400-119012400	Enhancers	Rectal Mucosa Donor 29	rectum
32	chr3:119011400-119012400	Enhancers	HUVEC	blood vessel
33	chr3:119011400-119012600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
34	chr3:119011400-119012600	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
35	chr3:119011400-119012600	Bivalent Enhancer	HepG2	liver
36	chr3:119011400-119012800	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
37	chr3:119011600-119012200	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
38	chr3:119011600-119012200	Enhancers	Primary B cells from cord blood	blood
39	chr3:119011600-119012200	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
40	chr3:119011600-119012400	Enhancers	Breast Myoepithelial Primary Cells	Breast
41	chr3:119011600-119012400	Enhancers	Primary hematopoietic stem cells	blood
42	chr3:119011600-119012400	Enhancers	Primary hematopoietic stem cells short term culture	blood
43	chr3:119011600-119012400	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
44	chr3:119011600-119012400	Enhancers	Fetal Brain Male	brain
45	chr3:119011600-119012400	Enhancers	Fetal Muscle Leg	muscle
46	chr3:119011600-119012400	Enhancers	Left Ventricle	heart
47	chr3:119011600-119012400	Enhancers	Right Atrium	heart
48	chr3:119011600-119012400	Enhancers	Skeletal Muscle Male	skeletal muscle
49	chr3:119011600-119012600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
50	chr3:119011600-119012600	Bivalent Enhancer	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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