Variant report

Variant	rs554756051
Chromosome Location	chr14:69929062-69929063
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:69863461..69868593-chr14:69924955..69929429,6	MCF-7	breast:

Variant related genes	Relation type
ENSG00000100632	Chromatin interaction
ENSG00000029364	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3396933	chr14:69906914-70001258	Enhancers Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Strong transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv1048882	chr14:69920881-69976694	Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv1052107	chr14:69922552-69969297	Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv1039230	chr14:69922552-69972002	Strong transcription Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv1039192	chr14:69922552-69976694	Bivalent Enhancer Weak transcription Strong transcription Bivalent/Poised TSS Enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
6	nsv456335	chr14:69928307-69971598	Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Bivalent/Poised TSS Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
7	nsv564967	chr14:69928307-69971598	Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:109 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:69892200-69931400	Weak transcription	K562	blood
2	chr14:69903600-69937800	Weak transcription	Psoas Muscle	Psoas
3	chr14:69909000-69933200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
4	chr14:69915800-69932600	Weak transcription	Fetal Heart	heart
5	chr14:69918400-69929200	Strong transcription	Primary T cells from cord blood	blood
6	chr14:69919200-69929600	Strong transcription	Primary T helper cells fromperipheralblood	blood
7	chr14:69919800-69929400	Strong transcription	Fetal Intestine Large	intestine
8	chr14:69919800-69929600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr14:69919800-69929800	Strong transcription	Monocytes-CD14+_RO01746	blood
10	chr14:69920000-69929400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr14:69920000-69929400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr14:69920000-69930400	Weak transcription	Right Ventricle	heart
13	chr14:69920200-69929200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
14	chr14:69921000-69930400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr14:69922000-69929400	Strong transcription	Fetal Muscle Leg	muscle
16	chr14:69922200-69931600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
17	chr14:69922400-69929400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr14:69922400-69929400	Strong transcription	Fetal Muscle Trunk	muscle
19	chr14:69922600-69929400	Strong transcription	Fetal Lung	lung
20	chr14:69923400-69931000	Weak transcription	Stomach Mucosa	stomach
21	chr14:69923600-69930400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr14:69923600-69950400	Weak transcription	Gastric	stomach
23	chr14:69923800-69930400	Weak transcription	HMEC	breast
24	chr14:69923800-69930800	Weak transcription	HepG2	liver
25	chr14:69923800-69931200	Weak transcription	NHDF-Ad	bronchial
26	chr14:69924200-69931400	Weak transcription	Small Intestine	intestine
27	chr14:69925400-69931200	Weak transcription	Lung	lung
28	chr14:69925400-69931400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
29	chr14:69925400-69939600	Weak transcription	Pancreas	Pancrea
30	chr14:69925400-69942000	Weak transcription	Spleen	Spleen
31	chr14:69925600-69929800	Weak transcription	Cortex derived primary cultured neurospheres	brain
32	chr14:69925600-69930000	Weak transcription	HUES48 Cell Line	embryonic stem cell
33	chr14:69925600-69930400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
34	chr14:69925600-69940000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
35	chr14:69925600-69940000	Weak transcription	Hela-S3	cervix
36	chr14:69925800-69930000	Weak transcription	HUES6 Cell Line	embryonic stem cell
37	chr14:69925800-69930400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
38	chr14:69925800-69930600	Weak transcription	Brain Angular Gyrus	brain
39	chr14:69926000-69929400	Weak transcription	Esophagus	oesophagus
40	chr14:69926000-69930200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
41	chr14:69926000-69930200	Weak transcription	Brain Cingulate Gyrus	brain
42	chr14:69926000-69930600	Weak transcription	H9 Cell Line	embryonic stem cell
43	chr14:69926000-69930800	Weak transcription	HUVEC	blood vessel
44	chr14:69926000-69931400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
45	chr14:69926000-69933000	Weak transcription	A549	lung
46	chr14:69926000-69933200	Weak transcription	Brain Inferior Temporal Lobe	brain
47	chr14:69926000-69940000	Weak transcription	Brain Anterior Caudate	brain
48	chr14:69926000-69940000	Weak transcription	Fetal Intestine Small	intestine
49	chr14:69926200-69929600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
50	chr14:69926200-69930400	Weak transcription	Brain Substantia Nigra	brain

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