Variant report

Variant	rs554855435
Chromosome Location	chr15:56168898-56168899
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv457157	chr15:55722213-56255774	Flanking Active TSS Enhancers Active TSS Strong transcription Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv569539	chr15:55722213-56255774	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	esv2761966	chr15:56167250-56192861	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:56148200-56174400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr15:56149000-56177600	Weak transcription	Spleen	Spleen
3	chr15:56152800-56174600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr15:56153000-56174000	Weak transcription	Primary hematopoietic stem cells	blood
5	chr15:56153000-56174400	Weak transcription	HSMMtube	muscle
6	chr15:56153000-56174800	Weak transcription	Fetal Intestine Small	intestine
7	chr15:56153000-56176400	Weak transcription	Esophagus	oesophagus
8	chr15:56153600-56178600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
9	chr15:56155400-56174800	Weak transcription	Primary neutrophils fromperipheralblood	blood
10	chr15:56155400-56175600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
11	chr15:56158200-56176400	Weak transcription	Left Ventricle	heart
12	chr15:56161200-56174400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr15:56161200-56179800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr15:56161400-56174400	Weak transcription	NHEK	skin
15	chr15:56161400-56174600	Weak transcription	Primary T cells from cord blood	blood
16	chr15:56161400-56177400	Weak transcription	Duodenum Mucosa	Duodenum
17	chr15:56161800-56174200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr15:56163400-56174600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr15:56163600-56174400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr15:56165000-56171200	Weak transcription	Sigmoid Colon	Sigmoid Colon
21	chr15:56165200-56174200	Weak transcription	Liver	Liver
22	chr15:56165200-56174200	Weak transcription	Skeletal Muscle Female	skeletal muscle
23	chr15:56165600-56169400	Weak transcription	HSMM	muscle
24	chr15:56165600-56171200	Weak transcription	Aorta	Aorta
25	chr15:56165600-56174800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
26	chr15:56166000-56170600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr15:56166000-56170800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr15:56166000-56171400	Weak transcription	HUVEC	blood vessel
29	chr15:56166000-56174400	Weak transcription	Muscle Satellite Cultured Cells	--
30	chr15:56166000-56185400	Weak transcription	Hela-S3	cervix
31	chr15:56167800-56169200	Enhancers	A549	lung
32	chr15:56167800-56176200	Weak transcription	Psoas Muscle	Psoas

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