Variant report

Variant	rs554886722
Chromosome Location	chr15:76431460-76431461
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:76220909..76222483-chr15:76431367..76432547,6	MCF-7	breast:
2	chr15:76431446..76432246-chr15:76440422..76441109,2	MCF-7	breast:
3	chr15:76350898..76351807-chr15:76431306..76432503,7	MCF-7	breast:
4	chr15:76349503..76350850-chr15:76431448..76432473,12	K562	blood:
5	chr15:76195261..76196894-chr15:76430486..76432103,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000167196	Chromatin interaction
ENSG00000169752	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv569998	chr15:76232605-76550938	Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv1048760	chr15:76334544-76496977	Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv833057	chr15:76367848-76585868	ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Weak transcription Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
4	nsv1039595	chr15:76431374-76483342	Enhancers Bivalent Enhancer Genic enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
5	nsv1045860	chr15:76431374-76485536	Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases
6	nsv1053643	chr15:76431374-76485966	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:76416600-76431600	Weak transcription	Pancreas	Pancrea
2	chr15:76426400-76432000	Weak transcription	Skeletal Muscle Male	skeletal muscle
3	chr15:76428200-76432000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr15:76429000-76432000	Weak transcription	Brain Hippocampus Middle	brain
5	chr15:76429400-76442800	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr15:76429600-76442800	Weak transcription	Brain Angular Gyrus	brain
7	chr15:76430600-76431800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr15:76430600-76432400	Enhancers	HMEC	breast
9	chr15:76430600-76432800	Enhancers	Breast Myoepithelial Primary Cells	Breast
10	chr15:76430800-76432000	Enhancers	Esophagus	oesophagus
11	chr15:76430800-76432400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr15:76431000-76432200	Enhancers	iPS-18 Cell Line	embryonic stem cell
13	chr15:76431000-76432600	Enhancers	ES-I3 Cell Line	embryonic stem cell
14	chr15:76431000-76433000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr15:76431200-76432000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
16	chr15:76431200-76432200	Enhancers	HUES64 Cell Line	embryonic stem cell
17	chr15:76431200-76432600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr15:76431200-76432600	Enhancers	Placenta	Placenta
19	chr15:76431200-76432800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
20	chr15:76431200-76432800	Enhancers	Primary neutrophils fromperipheralblood	blood
21	chr15:76431200-76432800	Enhancers	Primary hematopoietic stem cells short term culture	blood
22	chr15:76431200-76432800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr15:76431200-76432800	Enhancers	GM12878-XiMat	blood
24	chr15:76431400-76431600	Enhancers	iPS-20b Cell Line	embryonic stem cell
25	chr15:76431400-76431800	Weak transcription	Skeletal Muscle Female	skeletal muscle
26	chr15:76431400-76431800	Enhancers	NHEK	skin
27	chr15:76431400-76432000	Enhancers	iPS-15b Cell Line	embryonic stem cell
28	chr15:76431400-76432000	Active TSS	Hela-S3	cervix
29	chr15:76431400-76432200	Enhancers	HUES48 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links