Variant report

Variant	rs554913565
Chromosome Location	chr8:108235934-108235935
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029202	chr8:107796289-108384241	Enhancers Weak transcription Genic enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv539712	chr8:107796289-108384241	Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1034210	chr8:107796489-108384102	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv539713	chr8:107796489-108384102	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv529383	chr8:107796490-108368465	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv915821	chr8:107796490-108393008	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv916496	chr8:107813722-108338822	Genic enhancers Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	nsv1028726	chr8:107816841-108392547	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
9	nsv497805	chr8:107852509-108368371	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
10	nsv1026763	chr8:108155029-108263914	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
11	esv2764100	chr8:108220671-108469233	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
12	nsv1030831	chr8:108224295-108466437	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
13	nsv539714	chr8:108224295-108466437	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
14	nsv465760	chr8:108224687-108485912	Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
15	nsv611851	chr8:108224687-108485912	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
16	nsv891266	chr8:108234516-108307058	Strong transcription Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:108227800-108276200	Weak transcription	Aorta	Aorta
2	chr8:108233200-108239600	Enhancers	NHDF-Ad	bronchial
3	chr8:108233200-108240000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr8:108233800-108239200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr8:108234000-108236400	Enhancers	Breast Myoepithelial Primary Cells	Breast
6	chr8:108234000-108239000	Enhancers	Osteobl	bone
7	chr8:108234200-108236600	Enhancers	HSMMtube	muscle
8	chr8:108234200-108237400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr8:108234400-108237200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr8:108234800-108236000	Enhancers	HUVEC	blood vessel
11	chr8:108234800-108236400	Enhancers	HSMM	muscle
12	chr8:108234800-108236600	Enhancers	Adipose Nuclei	Adipose
13	chr8:108235000-108236400	Enhancers	Primary monocytes fromperipheralblood	blood
14	chr8:108235000-108236400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr8:108235000-108236400	Enhancers	NH-A	brain
16	chr8:108235200-108236000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr8:108235200-108236000	Enhancers	Primary neutrophils fromperipheralblood	blood
18	chr8:108235200-108236200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr8:108235200-108236200	Enhancers	Hela-S3	cervix
20	chr8:108235200-108236400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr8:108235200-108236400	Enhancers	Fetal Lung	lung
22	chr8:108235200-108236400	Enhancers	Stomach Smooth Muscle	stomach
23	chr8:108235200-108236400	Enhancers	HMEC	breast
24	chr8:108235200-108236600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr8:108235200-108236600	Enhancers	Duodenum Smooth Muscle	Duodenum
26	chr8:108235200-108236600	Enhancers	Rectal Smooth Muscle	rectum
27	chr8:108235200-108236600	Enhancers	NHEK	skin
28	chr8:108235400-108236000	Enhancers	Brain Anterior Caudate	brain
29	chr8:108235400-108236400	Enhancers	Primary hematopoietic stem cells short term culture	blood
30	chr8:108235600-108236000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr8:108235600-108237400	Weak transcription	Brain Substantia Nigra	brain
32	chr8:108235600-108237800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr8:108235600-108239200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
34	chr8:108235600-108239800	Enhancers	Muscle Satellite Cultured Cells	--
35	chr8:108235800-108236200	Weak transcription	NHLF	lung
36	chr8:108235800-108236400	Enhancers	Monocytes-CD14+_RO01746	blood
37	chr8:108235800-108237400	Weak transcription	Colon Smooth Muscle	Colon
38	chr8:108235800-108238000	Weak transcription	A549	lung
39	chr8:108235800-108238400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
40	chr8:108235800-108239000	Weak transcription	Cortex derived primary cultured neurospheres	brain

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