Variant report

Variant	rs554949521
Chromosome Location	chr9:79302370-79302371
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869152	chr9:78742197-79583399	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	nsv931033	chr9:78850330-79366454	Genic enhancers Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv1040363	chr9:79246366-79711737	Weak transcription Transcr. at gene 5' and 3' Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	esv3431140	chr9:79302009-79302456	Flanking Active TSS Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:79266400-79306800	Weak transcription	Fetal Stomach	stomach
2	chr9:79270400-79303000	Weak transcription	Colon Smooth Muscle	Colon
3	chr9:79278200-79303400	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr9:79283000-79302600	Weak transcription	Stomach Smooth Muscle	stomach
5	chr9:79283000-79303000	Weak transcription	Brain Cingulate Gyrus	brain
6	chr9:79290400-79306000	Weak transcription	Cortex derived primary cultured neurospheres	brain
7	chr9:79295400-79303000	Weak transcription	Brain Angular Gyrus	brain
8	chr9:79296000-79303000	Weak transcription	Brain Hippocampus Middle	brain
9	chr9:79296800-79304800	Weak transcription	Fetal Thymus	thymus
10	chr9:79298200-79303600	Weak transcription	Small Intestine	intestine
11	chr9:79298800-79303200	Weak transcription	Brain Inferior Temporal Lobe	brain
12	chr9:79299400-79302400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr9:79299400-79303400	Weak transcription	Brain Anterior Caudate	brain
14	chr9:79299400-79303400	Weak transcription	Brain Substantia Nigra	brain
15	chr9:79300400-79332200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr9:79300800-79302400	Weak transcription	HSMMtube	muscle
17	chr9:79300800-79304200	Enhancers	NHDF-Ad	bronchial
18	chr9:79301600-79305000	Enhancers	Stomach Mucosa	stomach
19	chr9:79301800-79302400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr9:79301800-79302400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr9:79301800-79302600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr9:79302000-79303000	Enhancers	Osteobl	bone
23	chr9:79302000-79303400	Enhancers	Muscle Satellite Cultured Cells	--
24	chr9:79302000-79303600	Enhancers	Aorta	Aorta
25	chr9:79302000-79303800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr9:79302000-79304200	Enhancers	HMEC	breast
27	chr9:79302000-79304200	Enhancers	HSMM	muscle
28	chr9:79302200-79302800	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr9:79302200-79304200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr9:79302200-79304200	Enhancers	HUVEC	blood vessel

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