Variant report

Variant	rs555320744
Chromosome Location	chr2:37803542-37803543
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:37799670..37802467-chr2:37802654..37804539,2	MCF-7	breast:
2	chr2:37795029..37797811-chr2:37802354..37805859,3	K562	blood:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833814	chr2:37643132-37840247	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv456374	chr2:37669487-37868214	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv470453	chr2:37669487-37868214	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv581473	chr2:37669487-37868214	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	esv2757793	chr2:37796654-38138939	Flanking Active TSS Weak transcription Enhancers Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
6	esv2759043	chr2:37796654-38138939	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
7	esv2762494	chr2:37802996-37813373	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:37796400-37809600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
2	chr2:37796600-37810200	Weak transcription	Pancreas	Pancrea
3	chr2:37798400-37804200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr2:37798600-37806400	Weak transcription	K562	blood
5	chr2:37799200-37812400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr2:37801200-37803800	Weak transcription	NHEK	skin
7	chr2:37801400-37803800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr2:37801400-37804000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr2:37801400-37807600	Weak transcription	Pancreatic Islets	Pancreatic Islet
10	chr2:37801600-37803600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr2:37801600-37803600	Weak transcription	HMEC	breast
12	chr2:37801600-37803800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr2:37801600-37803800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr2:37801600-37803800	Weak transcription	HSMM	muscle
15	chr2:37801600-37804200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr2:37801600-37804200	Weak transcription	Hela-S3	cervix
17	chr2:37801600-37804200	Weak transcription	NH-A	brain
18	chr2:37801600-37804200	Weak transcription	NHDF-Ad	bronchial
19	chr2:37801600-37804200	Weak transcription	NHLF	lung
20	chr2:37801600-37806200	Weak transcription	Placenta Amnion	Placenta Amnion
21	chr2:37801600-37809600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr2:37801800-37803600	Weak transcription	Osteobl	bone
23	chr2:37801800-37803800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr2:37801800-37804200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr2:37802000-37803600	Weak transcription	Muscle Satellite Cultured Cells	--
26	chr2:37802000-37804200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr2:37802000-37812400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links