Variant report

Variant	rs555638762
Chromosome Location	chr2:128103804-128103805
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	EP300	chr2:128103769-128103847	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:128103044..128106466-chr2:128144475..128146523,3	MCF-7	breast:

Variant related genes	Relation type
MAP3K2	TF binding region
ENSG00000169967	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3459771	chr2:128103479-128114160	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	esv3459772	chr2:128103655-128114047	Weak transcription Enhancers ZNF genes & repeats Genic enhancers Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:82 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:128059400-128109600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr2:128069000-128117000	Weak transcription	Small Intestine	intestine
3	chr2:128072200-128109600	Weak transcription	Esophagus	oesophagus
4	chr2:128072200-128111800	Weak transcription	K562	blood
5	chr2:128072600-128112000	Weak transcription	NHEK	skin
6	chr2:128074800-128106800	Weak transcription	Spleen	Spleen
7	chr2:128077000-128116200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr2:128077200-128122800	Weak transcription	Aorta	Aorta
9	chr2:128078600-128109600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr2:128078800-128105400	Weak transcription	HSMMtube	muscle
11	chr2:128079400-128107800	Weak transcription	Brain Inferior Temporal Lobe	brain
12	chr2:128079800-128107600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
13	chr2:128079800-128114600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr2:128082000-128105200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
15	chr2:128082000-128114600	Weak transcription	Cortex derived primary cultured neurospheres	brain
16	chr2:128083600-128105400	Weak transcription	Brain Substantia Nigra	brain
17	chr2:128083600-128117000	Weak transcription	Brain Anterior Caudate	brain
18	chr2:128086600-128112000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
19	chr2:128088800-128109400	Weak transcription	Right Ventricle	heart
20	chr2:128090800-128112000	Weak transcription	Rectal Smooth Muscle	rectum
21	chr2:128092600-128104400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr2:128092600-128109400	Weak transcription	Lung	lung
23	chr2:128092600-128122000	Weak transcription	Pancreas	Pancrea
24	chr2:128092800-128109600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
25	chr2:128093200-128122800	Weak transcription	Fetal Kidney	kidney
26	chr2:128093400-128106800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
27	chr2:128093400-128107400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
28	chr2:128094800-128106800	Weak transcription	Gastric	stomach
29	chr2:128095600-128122000	Weak transcription	Brain Angular Gyrus	brain
30	chr2:128096200-128105400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
31	chr2:128096200-128105800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
32	chr2:128096200-128106200	Weak transcription	Stomach Smooth Muscle	stomach
33	chr2:128096400-128105400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
34	chr2:128096400-128109000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
35	chr2:128096400-128109400	Weak transcription	Ovary	ovary
36	chr2:128096400-128112000	Weak transcription	Brain Hippocampus Middle	brain
37	chr2:128096400-128122200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
38	chr2:128096600-128105400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
39	chr2:128096800-128117800	Weak transcription	Duodenum Mucosa	Duodenum
40	chr2:128096800-128119600	Weak transcription	HSMM	muscle
41	chr2:128097000-128105400	Weak transcription	Adipose Nuclei	Adipose
42	chr2:128098000-128106200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
43	chr2:128098200-128105400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
44	chr2:128099000-128109400	Weak transcription	Right Atrium	heart
45	chr2:128100000-128104400	Weak transcription	Primary T helper cells fromperipheralblood	blood
46	chr2:128100000-128104400	Weak transcription	Fetal Stomach	stomach
47	chr2:128100000-128112000	Weak transcription	Fetal Lung	lung
48	chr2:128100200-128104800	Weak transcription	Primary hematopoietic stem cells	blood
49	chr2:128100200-128109600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
50	chr2:128100200-128110000	Weak transcription	Fetal Intestine Large	intestine

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