Variant report

Variant	rs555754247
Chromosome Location	chr15:34502053-34502054
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:17)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:17 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:34499795..34503886-chr15:34627014..34631557,6	K562	blood:
2	chr15:34500839..34504564-chr15:34529168..34532268,3	K562	blood:
3	chr15:34500871..34503422-chr15:34659158..34662481,4	K562	blood:
4	chr15:34499795..34502298-chr15:34629083..34632074,3	K562	blood:
5	chr15:34498121..34503791-chr15:34514506..34519551,14	K562	blood:
6	chr15:34391225..34395745-chr15:34498845..34504196,8	K562	blood:
7	chr15:34501834..34502427-chr17:52978030..52978670,2	Hela-S3	cervix:
8	chr15:34329770..34332450-chr15:34500868..34502911,3	K562	blood:
9	chr15:34330950..34333091-chr15:34501411..34503652,2	K562	blood:
10	chr15:34502043..34502681-chr6:27100763..27101327,2	Hela-S3	cervix:
11	chr15:34474173..34475997-chr15:34500138..34502124,2	MCF-7	breast:
12	chr15:34497680..34504001-chr15:34514973..34521212,14	K562	blood:
13	chr15:34417003..34419819-chr15:34499362..34502166,2	K562	blood:
14	chr11:62432317..62432844-chr15:34501985..34502487,2	HCT-116	colon:
15	chr15:34500616..34503501-chr15:34610779..34612770,2	K562	blood:
16	chr15:34491377..34494902-chr15:34500682..34503965,3	K562	blood:
17	chr15:34391885..34395742-chr15:34500701..34502399,4	K562	blood:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-C15orf29-1	chr15:34500718-34502270	NONHSAT041571

No data

Variant related genes	Relation type
ENSG00000140199	Chromatin interaction
ENSG00000255432	Chromatin interaction
ENSG00000176454	Chromatin interaction
ENSG00000196787	Chromatin interaction
ENSG00000182405	Chromatin interaction
ENSG00000134152	Chromatin interaction
ENSG00000134153	Chromatin interaction
ENSG00000128463	Chromatin interaction
ENSG00000162194	Chromatin interaction
ENSG00000214756	Chromatin interaction
ENSG00000169857	Chromatin interaction
ENSG00000141198	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052804	chr15:34498529-34841447	Active TSS Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	nsv542341	chr15:34498529-34841447	Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
3	nsv1045173	chr15:34501055-34596995	Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Enhancers Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:34499800-34502600	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr15:34500200-34502600	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr15:34500400-34502400	Active TSS	H1 Cell Line	embryonic stem cell
4	chr15:34500400-34502400	Active TSS	HUES48 Cell Line	embryonic stem cell
5	chr15:34500400-34502600	Active TSS	HSMM	muscle
6	chr15:34500400-34502600	Active TSS	HSMMtube	muscle
7	chr15:34500600-34502200	Active TSS	ES-I3 Cell Line	embryonic stem cell
8	chr15:34500600-34502200	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr15:34500600-34502400	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr15:34500600-34502400	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr15:34500600-34502400	Active TSS	Fetal Muscle Leg	muscle
12	chr15:34500600-34502400	Active TSS	HMEC	breast
13	chr15:34500600-34502400	Active TSS	NHDF-Ad	bronchial
14	chr15:34500600-34502600	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr15:34500600-34502600	Active TSS	Placenta	Placenta
16	chr15:34500600-34502600	Active TSS	GM12878-XiMat	blood
17	chr15:34500600-34502800	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr15:34500800-34502200	Active TSS	ES-WA7 Cell Line	embryonic stem cell
19	chr15:34500800-34502400	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr15:34500800-34502400	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr15:34500800-34502400	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr15:34500800-34502400	Active TSS	Fetal Muscle Trunk	muscle
23	chr15:34500800-34502400	Active TSS	K562	blood
24	chr15:34500800-34502600	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr15:34500800-34502600	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr15:34500800-34502600	Active TSS	Right Atrium	heart
27	chr15:34501000-34502200	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
28	chr15:34501000-34502400	Active TSS	H9 Cell Line	embryonic stem cell
29	chr15:34501000-34502400	Active TSS	HUES64 Cell Line	embryonic stem cell
30	chr15:34501000-34502400	Active TSS	Brain Anterior Caudate	brain
31	chr15:34501000-34502400	Active TSS	Gastric	stomach
32	chr15:34501000-34502400	Active TSS	Left Ventricle	heart
33	chr15:34501000-34502600	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr15:34501000-34502600	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
35	chr15:34501000-34502600	Active TSS	Ovary	ovary
36	chr15:34501000-34502600	Active TSS	Psoas Muscle	Psoas
37	chr15:34501000-34502600	Active TSS	Right Ventricle	heart
38	chr15:34501000-34502600	Active TSS	NHLF	lung
39	chr15:34501200-34502200	Active TSS	Placenta Amnion	Placenta Amnion
40	chr15:34501200-34502200	Active TSS	Stomach Mucosa	stomach
41	chr15:34501200-34502400	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
42	chr15:34501200-34502400	Active TSS	HUES6 Cell Line	embryonic stem cell
43	chr15:34501200-34502400	Active TSS	iPS-15b Cell Line	embryonic stem cell
44	chr15:34501200-34502400	Active TSS	iPS-20b Cell Line	embryonic stem cell
45	chr15:34501200-34502400	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
46	chr15:34501200-34502400	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
47	chr15:34501200-34502400	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
48	chr15:34501200-34502400	Active TSS	Primary T cells fromperipheralblood	blood
49	chr15:34501200-34502400	Active TSS	Cortex derived primary cultured neurospheres	brain
50	chr15:34501200-34502400	Active TSS	Aorta	Aorta

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