Variant report

Variant	rs555768338
Chromosome Location	chr1:93808278-93808279
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr1:93808174-93808295	MCF10A-Er-Src	breast:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:93807407..93809426-chr1:93810981..93815349,3	MCF-7	breast:
2	chr1:93794370..93796630-chr1:93807088..93808805,2	K562	blood:

Variant related genes	Relation type
ENSG00000223745	TF binding region
DR1	TF binding region
ENSG00000223745	Chromatin interaction
ENSG00000117505	Chromatin interaction

Extended variants
information (count: 1 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv871640	chr1:93807122-93953469	Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:93765800-93809800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
2	chr1:93789200-93810200	Weak transcription	Esophagus	oesophagus
3	chr1:93790800-93810000	Weak transcription	Fetal Intestine Small	intestine
4	chr1:93794400-93810600	Weak transcription	Fetal Brain Male	brain
5	chr1:93795000-93810600	Weak transcription	Fetal Brain Female	brain
6	chr1:93797200-93810600	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr1:93799000-93810600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
8	chr1:93800400-93810200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr1:93801400-93810600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr1:93801800-93808600	Weak transcription	Fetal Heart	heart
11	chr1:93801800-93810600	Weak transcription	Brain Germinal Matrix	brain
12	chr1:93802200-93810600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
13	chr1:93802400-93810200	Weak transcription	Cortex derived primary cultured neurospheres	brain
14	chr1:93802600-93811000	Weak transcription	Spleen	Spleen
15	chr1:93803400-93810600	Weak transcription	Skeletal Muscle Male	skeletal muscle
16	chr1:93804200-93810800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr1:93804600-93810000	Weak transcription	Placenta Amnion	Placenta Amnion
18	chr1:93804800-93808400	Weak transcription	Pancreas	Pancrea
19	chr1:93804800-93809200	Weak transcription	K562	blood
20	chr1:93804800-93810400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr1:93804800-93810400	Weak transcription	Primary monocytes fromperipheralblood	blood
22	chr1:93804800-93810400	Weak transcription	Stomach Smooth Muscle	stomach
23	chr1:93804800-93810400	Weak transcription	NHLF	lung
24	chr1:93804800-93810600	Weak transcription	Rectal Mucosa Donor 29	rectum
25	chr1:93804800-93810800	Weak transcription	Aorta	Aorta
26	chr1:93804800-93810800	Weak transcription	Sigmoid Colon	Sigmoid Colon
27	chr1:93805000-93808400	Weak transcription	GM12878-XiMat	blood
28	chr1:93805000-93808400	Weak transcription	NHDF-Ad	bronchial
29	chr1:93805000-93809800	Weak transcription	Primary B cells from peripheral blood	blood
30	chr1:93805000-93809800	Weak transcription	Skeletal Muscle Female	skeletal muscle
31	chr1:93805000-93810000	Weak transcription	Primary neutrophils fromperipheralblood	blood
32	chr1:93805000-93810000	Weak transcription	Fetal Lung	lung
33	chr1:93805000-93810000	Weak transcription	Rectal Mucosa Donor 31	rectum
34	chr1:93805000-93810200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
35	chr1:93805000-93810200	Weak transcription	Liver	Liver
36	chr1:93805000-93810200	Weak transcription	Placenta	Placenta
37	chr1:93805000-93810400	Weak transcription	Adipose Nuclei	Adipose
38	chr1:93805000-93810400	Weak transcription	Lung	lung
39	chr1:93805000-93810400	Weak transcription	HSMMtube	muscle
40	chr1:93805000-93810600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
41	chr1:93805000-93810600	Weak transcription	Brain Angular Gyrus	brain
42	chr1:93805000-93810600	Weak transcription	Brain Cingulate Gyrus	brain
43	chr1:93805000-93810600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
44	chr1:93805000-93810600	Weak transcription	Duodenum Mucosa	Duodenum
45	chr1:93805000-93810600	Weak transcription	Fetal Kidney	kidney
46	chr1:93805000-93810600	Weak transcription	Fetal Stomach	stomach
47	chr1:93805000-93810600	Weak transcription	Ovary	ovary
48	chr1:93805200-93809200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
49	chr1:93805200-93809800	Weak transcription	Primary B cells from cord blood	blood
50	chr1:93805200-93809800	Weak transcription	Fetal Intestine Large	intestine

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