Variant report

Variant	rs555775362
Chromosome Location	chr11:35068422-35068423
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045837	chr11:34893992-35395190	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
2	nsv430371	chr11:34975067-35111292	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	esv1826391	chr11:35000983-35098193	Enhancers Flanking Active TSS Strong transcription Weak transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
4	nsv540999	chr11:35021936-35185471	Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
5	esv2758263	chr11:35029933-35226784	Genic enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
6	esv2759818	chr11:35029933-35238578	Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
7	nsv541000	chr11:35053717-35185471	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
8	nsv541001	chr11:35053717-35224624	Weak transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
9	esv2757437	chr11:35067482-35238578	Weak transcription Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:52 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:35061000-35071800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr11:35061800-35069400	Enhancers	Primary hematopoietic stem cells	blood
3	chr11:35061800-35072800	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr11:35062600-35069800	Weak transcription	Placenta	Placenta
5	chr11:35062600-35070200	Weak transcription	Stomach Mucosa	stomach
6	chr11:35062600-35070400	Weak transcription	Esophagus	oesophagus
7	chr11:35062800-35071800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr11:35062800-35073600	Enhancers	Primary T helper cells fromperipheralblood	blood
9	chr11:35063000-35071600	Weak transcription	K562	blood
10	chr11:35063200-35069800	Enhancers	Fetal Thymus	thymus
11	chr11:35063800-35068600	Weak transcription	Lung	lung
12	chr11:35064000-35077200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr11:35064400-35072000	Weak transcription	HSMMtube	muscle
14	chr11:35065000-35070400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr11:35065200-35071000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
16	chr11:35065200-35073200	Enhancers	Primary T cells fromperipheralblood	blood
17	chr11:35065400-35069600	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
18	chr11:35065400-35072600	Enhancers	Primary B cells from peripheral blood	blood
19	chr11:35065600-35069200	Enhancers	Thymus	Thymus
20	chr11:35065600-35073200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
21	chr11:35066000-35068800	Weak transcription	Colon Smooth Muscle	Colon
22	chr11:35066400-35070400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
23	chr11:35066400-35070400	Weak transcription	Adipose Nuclei	Adipose
24	chr11:35066800-35070400	Weak transcription	Spleen	Spleen
25	chr11:35067000-35071600	Weak transcription	Rectal Smooth Muscle	rectum
26	chr11:35067200-35070400	Weak transcription	Fetal Muscle Leg	muscle
27	chr11:35067200-35070400	Weak transcription	Pancreas	Pancrea
28	chr11:35067200-35071600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
29	chr11:35067400-35068600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
30	chr11:35067400-35069600	Enhancers	Dnd41	blood
31	chr11:35067400-35069800	Enhancers	Primary B cells from cord blood	blood
32	chr11:35067400-35070000	Weak transcription	Stomach Smooth Muscle	stomach
33	chr11:35067400-35070800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
34	chr11:35067400-35071200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
35	chr11:35067400-35071800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr11:35067600-35068600	Enhancers	Primary T helper naive cells from peripheral blood	blood
37	chr11:35067600-35069000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
38	chr11:35067600-35069400	Weak transcription	Rectal Mucosa Donor 31	rectum
39	chr11:35067600-35070400	Weak transcription	Fetal Stomach	stomach
40	chr11:35067800-35070600	Weak transcription	Fetal Intestine Large	intestine
41	chr11:35067800-35070800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
42	chr11:35067800-35071600	Enhancers	Primary T helper cells PMA-I stimulated	--
43	chr11:35067800-35071800	Enhancers	Primary T cells from cord blood	blood
44	chr11:35068000-35068600	Weak transcription	Duodenum Mucosa	Duodenum
45	chr11:35068400-35068600	Enhancers	Duodenum Smooth Muscle	Duodenum
46	chr11:35068400-35068800	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
47	chr11:35068400-35068800	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
48	chr11:35068400-35068800	Enhancers	Skeletal Muscle Female	skeletal muscle
49	chr11:35068400-35069000	Enhancers	Sigmoid Colon	Sigmoid Colon
50	chr11:35068400-35069200	Enhancers	Rectal Mucosa Donor 29	rectum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links