Variant report

Variant	rs556073695
Chromosome Location	chr4:56914510-56914511
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:56732780..56733548-chr4:56914397..56915335,2	K562	blood:
2	chr4:56914423..56917343-chr4:56954991..56956586,2	MCF-7	breast:
3	chr4:56902751..56905676-chr4:56913962..56916198,3	MCF-7	breast:
4	chr4:56912197..56914161-chr4:56914438..56916191,2	MCF-7	breast:

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2755990	chr4:56317136-57143037	Strong transcription Weak transcription Flanking Bivalent TSS/Enh Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
2	nsv1005845	chr4:56522075-56980357	Active TSS Bivalent Enhancer Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
3	esv3378090	chr4:56914220-56916768	Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Weak transcription Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:56908400-56914600	Weak transcription	GM12878-XiMat	blood
2	chr4:56909600-56914600	Weak transcription	Primary B cells from peripheral blood	blood
3	chr4:56914000-56914800	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
4	chr4:56914000-56916800	Active TSS	H1 Cell Line	embryonic stem cell
5	chr4:56914000-56917000	Active TSS	Cortex derived primary cultured neurospheres	brain
6	chr4:56914000-56917200	Active TSS	ES-I3 Cell Line	embryonic stem cell
7	chr4:56914200-56914600	Enhancers	Brain Germinal Matrix	brain
8	chr4:56914200-56917000	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr4:56914200-56917200	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr4:56914200-56917400	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr4:56914400-56914600	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
12	chr4:56914400-56914600	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr4:56914400-56914600	Bivalent Enhancer	Primary B cells from cord blood	blood
14	chr4:56914400-56914600	Bivalent Enhancer	Fetal Heart	heart
15	chr4:56914400-56914600	Enhancers	Fetal Intestine Small	intestine
16	chr4:56914400-56914600	Bivalent/Poised TSS	HepG2	liver
17	chr4:56914400-56914600	Bivalent Enhancer	Monocytes-CD14+_RO01746	blood
18	chr4:56914400-56914600	Bivalent Enhancer	Osteobl	bone
19	chr4:56914400-56914800	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
20	chr4:56914400-56914800	Flanking Bivalent TSS/Enh	HUES64 Cell Line	embryonic stem cell
21	chr4:56914400-56914800	Flanking Bivalent TSS/Enh	iPS-15b Cell Line	embryonic stem cell
22	chr4:56914400-56914800	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
23	chr4:56914400-56914800	Flanking Active TSS	Fetal Brain Female	brain
24	chr4:56914400-56914800	Active TSS	Rectal Mucosa Donor 29	rectum
25	chr4:56914400-56915000	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
26	chr4:56914400-56915000	Flanking Active TSS	Fetal Brain Male	brain
27	chr4:56914400-56915200	Flanking Active TSS	Primary hematopoietic stem cells	blood
28	chr4:56914400-56915200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
29	chr4:56914400-56915200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr4:56914400-56915200	Flanking Active TSS	HUVEC	blood vessel
31	chr4:56914400-56917000	Active TSS	ES-WA7 Cell Line	embryonic stem cell
32	chr4:56914400-56917200	Active TSS	Brain Substantia Nigra	brain
33	chr4:56914400-56917400	Active TSS	Pancreatic Islets	Pancreatic Islet
34	chr4:56914400-56917800	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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