Variant report

Variant	rs556108016
Chromosome Location	chr14:77964824-77964825
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:77924491..77927029-chr14:77963244..77966693,3	MCF-7	breast:
2	chr14:77929404..77931486-chr14:77963841..77966397,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000100591	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832835	chr14:77906706-78095207	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	esv3341035	chr14:77964024-77966572	Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Active TSS Flanking Active TSS Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:77964200-77965000	Bivalent Enhancer	Primary T killer memory cells from peripheral blood	blood
2	chr14:77964200-77965000	Bivalent Enhancer	Sigmoid Colon	Sigmoid Colon
3	chr14:77964200-77965000	Flanking Bivalent TSS/Enh	GM12878-XiMat	blood
4	chr14:77964200-77965200	Bivalent Enhancer	Stomach Mucosa	stomach
5	chr14:77964200-77965600	Bivalent/Poised TSS	NHEK	skin
6	chr14:77964200-77965800	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
7	chr14:77964200-77965800	Bivalent Enhancer	Primary T helper memory cells from peripheral blood 1	blood
8	chr14:77964200-77965800	Enhancers	Liver	Liver
9	chr14:77964200-77966000	Bivalent/Poised TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr14:77964200-77966000	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
11	chr14:77964200-77966000	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
12	chr14:77964200-77966000	Bivalent/Poised TSS	HepG2	liver
13	chr14:77964200-77966600	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
14	chr14:77964200-77966600	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
15	chr14:77964400-77965000	Flanking Bivalent TSS/Enh	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr14:77964400-77965000	Flanking Bivalent TSS/Enh	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr14:77964400-77965000	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells	blood
18	chr14:77964400-77965000	Flanking Bivalent TSS/Enh	Primary T helper cells PMA-I stimulated	--
19	chr14:77964400-77965000	Flanking Bivalent TSS/Enh	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr14:77964400-77965000	Flanking Bivalent TSS/Enh	Cortex derived primary cultured neurospheres	brain
21	chr14:77964400-77965000	Flanking Bivalent TSS/Enh	Brain Hippocampus Middle	brain
22	chr14:77964400-77965000	Bivalent Enhancer	Fetal Muscle Trunk	muscle
23	chr14:77964400-77965000	Flanking Bivalent TSS/Enh	Skeletal Muscle Female	skeletal muscle
24	chr14:77964400-77965000	Flanking Bivalent TSS/Enh	Thymus	Thymus
25	chr14:77964400-77965000	Flanking Bivalent TSS/Enh	HMEC	breast
26	chr14:77964400-77965000	Flanking Bivalent TSS/Enh	HUVEC	blood vessel
27	chr14:77964400-77965200	Flanking Bivalent TSS/Enh	Primary T regulatory cells fromperipheralblood	blood
28	chr14:77964400-77965200	Flanking Bivalent TSS/Enh	Adipose Nuclei	Adipose
29	chr14:77964400-77965200	Flanking Bivalent TSS/Enh	Stomach Smooth Muscle	stomach
30	chr14:77964400-77965400	Bivalent/Poised TSS	Fetal Brain Female	brain
31	chr14:77964400-77965400	Flanking Active TSS	Lung	lung
32	chr14:77964400-77965600	Bivalent/Poised TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr14:77964400-77965600	Bivalent/Poised TSS	Rectal Mucosa Donor 29	rectum
34	chr14:77964400-77965800	Bivalent/Poised TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr14:77964400-77965800	Bivalent/Poised TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr14:77964400-77965800	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
37	chr14:77964400-77965800	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
38	chr14:77964400-77965800	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells short term culture	blood
39	chr14:77964400-77965800	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Female	--
40	chr14:77964400-77965800	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin01	Skin
41	chr14:77964400-77965800	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin02	Skin
42	chr14:77964400-77965800	Flanking Bivalent TSS/Enh	Foreskin Melanocyte Primary Cells skin01	Skin
43	chr14:77964400-77965800	Bivalent Enhancer	Fetal Brain Male	brain
44	chr14:77964400-77965800	Active TSS	Pancreatic Islets	Pancreatic Islet
45	chr14:77964400-77965800	Flanking Active TSS	Right Ventricle	heart
46	chr14:77964400-77965800	Bivalent/Poised TSS	HSMM	muscle
47	chr14:77964400-77966000	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
48	chr14:77964400-77966400	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
49	chr14:77964600-77965000	Flanking Bivalent TSS/Enh	H9 Derived Neuron Cultured Cells	ES cell derived
50	chr14:77964600-77965000	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--

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