Variant report

Variant	rs556221558
Chromosome Location	chr1:72251001-72251002
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949599	chr1:71655652-72327802	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv1007250	chr1:71998391-72350683	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv534992	chr1:71998391-72350683	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv948821	chr1:72049987-72477221	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv1003446	chr1:72060680-72419918	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv817447	chr1:72098815-72558020	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv1008210	chr1:72099161-72374197	ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	nsv830181	chr1:72155983-72296578	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	nsv916783	chr1:72196061-72707953	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
10	nsv1007910	chr1:72247302-72543998	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
11	nsv947270	chr1:72249454-72253537	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:72239000-72252600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr1:72239600-72251200	Weak transcription	Fetal Stomach	stomach
3	chr1:72240600-72256600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr1:72247000-72254400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr1:72247400-72251200	Weak transcription	Thymus	Thymus
6	chr1:72248600-72251600	Enhancers	Colon Smooth Muscle	Colon
7	chr1:72249200-72254000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr1:72249600-72257000	Weak transcription	Primary hematopoietic stem cells	blood
9	chr1:72250200-72252400	Enhancers	Fetal Lung	lung
10	chr1:72250400-72251600	Enhancers	Fetal Kidney	kidney
11	chr1:72250400-72251600	Enhancers	Rectal Smooth Muscle	rectum
12	chr1:72250600-72251400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr1:72250800-72251400	Enhancers	Gastric	stomach
14	chr1:72250800-72251400	Enhancers	Stomach Smooth Muscle	stomach
15	chr1:72250800-72251600	Enhancers	Breast Myoepithelial Primary Cells	Breast
16	chr1:72250800-72251600	Enhancers	Aorta	Aorta
17	chr1:72250800-72251600	Enhancers	Right Atrium	heart
18	chr1:72250800-72251600	Enhancers	Right Ventricle	heart
19	chr1:72250800-72251800	Enhancers	Adipose Nuclei	Adipose
20	chr1:72251000-72252200	Weak transcription	Pancreas	Pancrea
21	chr1:72251000-72256000	Weak transcription	Pancreatic Islets	Pancreatic Islet

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