Variant report

Variant	rs556254957
Chromosome Location	chr4:143616710-143616711
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:143610637..143613671-chr4:143616411..143618882,3	MCF-7	breast:
2	chr4:143393327..143398147-chr4:143615863..143619957,7	MCF-7	breast:
3	chr4:143393259..143398108-chr4:143615372..143620802,7	MCF-7	breast:

Variant related genes	Relation type
ENSG00000109452	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830101	chr4:143518810-143684392	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	esv3467400	chr4:143615840-143621513	Flanking Active TSS Enhancers Weak transcription Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv3467401	chr4:143615840-143621513	Weak transcription Flanking Active TSS Enhancers Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv441917	chr4:143615874-143619949	Flanking Active TSS Weak transcription Enhancers Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	esv19572	chr4:143616010-143621320	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:143610200-143617000	Weak transcription	Thymus	Thymus
2	chr4:143611000-143617000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr4:143611000-143617400	Enhancers	Primary hematopoietic stem cells	blood
4	chr4:143611600-143617000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr4:143611800-143617000	Enhancers	Dnd41	blood
6	chr4:143612400-143617200	Weak transcription	Skeletal Muscle Female	skeletal muscle
7	chr4:143613000-143616800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
8	chr4:143613000-143617000	Weak transcription	Left Ventricle	heart
9	chr4:143613000-143617200	Weak transcription	Psoas Muscle	Psoas
10	chr4:143613200-143616800	Weak transcription	Fetal Heart	heart
11	chr4:143613200-143617000	Weak transcription	Fetal Thymus	thymus
12	chr4:143614600-143616800	Weak transcription	Primary T cells from cord blood	blood
13	chr4:143615200-143616800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
14	chr4:143615600-143617000	Enhancers	Primary T helper cells PMA-I stimulated	--
15	chr4:143615800-143617000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
16	chr4:143615800-143617000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
17	chr4:143615800-143620200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
18	chr4:143616000-143620600	Enhancers	Primary T killer memory cells from peripheral blood	blood
19	chr4:143616000-143628800	Enhancers	Primary T helper cells fromperipheralblood	blood
20	chr4:143616200-143617200	Weak transcription	Aorta	Aorta
21	chr4:143616400-143620200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
22	chr4:143616600-143617000	Enhancers	Primary T helper naive cells from peripheral blood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links