Variant report

Variant	rs55640425
Chromosome Location	chr5:61373514-61373515
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs60839972	0.82[AFR][1000 genomes]
rs73114049	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73760543	1.00[AMR][1000 genomes]
rs73760546	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7715895	0.91[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024090	chr5:61258759-61921150	Flanking Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	nsv881725	chr5:61265820-61376320	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv830317	chr5:61298840-61478113	Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:61368600-61375400	Enhancers	ES-I3 Cell Line	embryonic stem cell
2	chr5:61371000-61373600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr5:61371400-61374800	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr5:61371400-61375400	Enhancers	HUES6 Cell Line	embryonic stem cell
5	chr5:61371600-61375800	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr5:61371800-61374200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr5:61372000-61374000	Enhancers	H9 Cell Line	embryonic stem cell
8	chr5:61372200-61373800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr5:61372400-61374400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr5:61372600-61373600	Weak transcription	HUES64 Cell Line	embryonic stem cell
11	chr5:61372600-61373600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
12	chr5:61372600-61373600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr5:61373000-61373600	Enhancers	Dnd41	blood
14	chr5:61373000-61374200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr5:61373000-61374200	Enhancers	NHEK	skin
16	chr5:61373000-61374600	Enhancers	Fetal Thymus	thymus
17	chr5:61373200-61374000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
18	chr5:61373200-61374200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr5:61373200-61374400	Enhancers	HMEC	breast
20	chr5:61373200-61375400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
21	chr5:61373200-61375400	Enhancers	H1 Cell Line	embryonic stem cell
22	chr5:61373400-61374200	Enhancers	Breast Myoepithelial Primary Cells	Breast
23	chr5:61373400-61374200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr5:61373400-61374200	Enhancers	Placenta	Placenta
25	chr5:61373400-61374600	Enhancers	Primary T cells from cord blood	blood

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