Variant report

Variant	rs55642444
Chromosome Location	chr3:25199097-25199098
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs17517413	0.87[EUR][1000 genomes]
rs17517778	0.86[EUR][1000 genomes]
rs73042357	1.00[AFR][1000 genomes]
rs73042364	1.00[AFR][1000 genomes]
rs73048430	1.00[AFR][1000 genomes]
rs73048450	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013446	chr3:25176609-25221334	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv876631	chr3:25185448-25231571	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv949035	chr3:25194301-26084890	Weak transcription Bivalent/Poised TSS Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	68 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:25194000-25211800	Weak transcription	Aorta	Aorta
2	chr3:25196400-25199600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr3:25196800-25200400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr3:25197000-25199200	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr3:25197600-25205200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr3:25197800-25199200	Enhancers	H1 Cell Line	embryonic stem cell
7	chr3:25197800-25200600	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr3:25198200-25199400	Enhancers	A549	lung
9	chr3:25198200-25200600	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr3:25198400-25199800	Enhancers	iPS-20b Cell Line	embryonic stem cell
11	chr3:25198400-25200000	Enhancers	iPS-15b Cell Line	embryonic stem cell
12	chr3:25198400-25200600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr3:25198400-25200600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
14	chr3:25198600-25199600	Enhancers	HUES6 Cell Line	embryonic stem cell
15	chr3:25198600-25201200	Enhancers	iPS-18 Cell Line	embryonic stem cell
16	chr3:25198600-25201200	Weak transcription	Fetal Heart	heart
17	chr3:25198600-25211200	Weak transcription	Fetal Stomach	stomach
18	chr3:25198800-25199200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr3:25198800-25199600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr3:25198800-25199800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr3:25198800-25200000	Enhancers	HUES48 Cell Line	embryonic stem cell
22	chr3:25198800-25200600	Weak transcription	HSMM	muscle
23	chr3:25198800-25207000	Weak transcription	Fetal Lung	lung
24	chr3:25199000-25199200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
25	chr3:25199000-25199200	Enhancers	Breast Myoepithelial Primary Cells	Breast

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