Variant report

Variant rs55642947
Chromosome Location chr17:43510187-43510188
allele C/G
Outlinks Ensembl   UCSC
Chromatin state (count:116 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr17:43506000-43510400 Bivalent/Poised TSS HUES64 Cell Line embryonic stem cell
2 chr17:43506000-43510600 Bivalent/Poised TSS ES-I3 Cell Line embryonic stem cell
3 chr17:43506200-43510400 Bivalent/Poised TSS HUES48 Cell Line embryonic stem cell
4 chr17:43506400-43510600 Bivalent/Poised TSS HUES6 Cell Line embryonic stem cell
5 chr17:43507800-43510200 Flanking Bivalent TSS/Enh Stomach Smooth Muscle stomach
6 chr17:43507800-43510600 Bivalent/Poised TSS iPS-20b Cell Line embryonic stem cell
7 chr17:43507800-43510600 Active TSS Esophagus oesophagus
8 chr17:43507800-43511000 Flanking Active TSS Primary hematopoietic stem cells G-CSF-mobilized Male --
9 chr17:43508000-43510600 Bivalent/Poised TSS iPS-18 Cell Line embryonic stem cell
10 chr17:43508000-43510600 Flanking Active TSS Primary T helper cells fromperipheralblood blood
11 chr17:43508000-43510800 Flanking Active TSS Primary hematopoietic stem cells G-CSF-mobilized Female --
12 chr17:43508200-43510200 Active TSS Placenta Amnion Placenta Amnion
13 chr17:43508200-43510400 Active TSS Breast Myoepithelial Primary Cells Breast
14 chr17:43508200-43510600 Bivalent/Poised TSS H1 Cell Line embryonic stem cell
15 chr17:43508200-43510600 Active TSS H9 Cell Line embryonic stem cell
16 chr17:43508200-43510800 Flanking Active TSS Primary hematopoietic stem cells short term culture blood
17 chr17:43508400-43510200 Flanking Active TSS Primary B cells from cord blood blood
18 chr17:43508400-43510400 Active TSS ES-WA7 Cell Line embryonic stem cell
19 chr17:43508400-43510400 Active TSS Small Intestine intestine
20 chr17:43508600-43510600 Active TSS iPS-15b Cell Line embryonic stem cell
21 chr17:43508600-43510600 Active TSS iPS DF 6.9 Cell Line embryonic stem cell
22 chr17:43508600-43510600 Bivalent Enhancer Fetal Brain Male brain
23 chr17:43508800-43510200 Bivalent/Poised TSS Fetal Brain Female brain
24 chr17:43508800-43510200 Active TSS Ovary ovary
25 chr17:43508800-43510200 Active TSS Sigmoid Colon Sigmoid Colon
26 chr17:43508800-43510400 Flanking Active TSS H1 Derived Mesenchymal Stem Cells ES cell derived
27 chr17:43508800-43510400 Active TSS H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
28 chr17:43508800-43510400 Active TSS Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
29 chr17:43508800-43510400 Flanking Bivalent TSS/Enh Brain Germinal Matrix brain
30 chr17:43508800-43510400 Active TSS GM12878-XiMat blood
31 chr17:43509000-43510200 Active TSS Primary neutrophils fromperipheralblood blood
32 chr17:43509000-43510200 Active TSS Primary T regulatory cells fromperipheralblood blood
33 chr17:43509000-43510200 Bivalent/Poised TSS HepG2 liver
34 chr17:43509000-43510400 Bivalent/Poised TSS hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
35 chr17:43509000-43510400 Active TSS Left Ventricle heart
36 chr17:43509000-43510600 Active TSS Rectal Mucosa Donor 29 rectum
37 chr17:43509000-43510600 Active TSS Right Atrium heart
38 chr17:43509200-43510200 Active TSS Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
39 chr17:43509200-43510200 Active TSS Primary monocytes fromperipheralblood blood
40 chr17:43509200-43510200 Active TSS Brain Dorsolateral Prefrontal Cortex brain
41 chr17:43509200-43510200 Bivalent/Poised TSS Psoas Muscle Psoas
42 chr17:43509200-43510200 Active TSS Monocytes-CD14+_RO01746 blood
43 chr17:43509200-43510400 Active TSS Lung lung
44 chr17:43509200-43510400 Active TSS Rectal Mucosa Donor 31 rectum
45 chr17:43509200-43510400 Active TSS Osteobl bone
46 chr17:43509200-43516200 Weak transcription HSMMtube muscle
47 chr17:43509400-43510400 Active TSS Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
48 chr17:43509600-43510400 Transcr. at gene 5' and 3' iPS DF 19.11 Cell Line embryonic stem cell
49 chr17:43509600-43510400 Active TSS Primary T cells effector/memory enriched fromperipheralblood blood
50 chr17:43509600-43510600 Flanking Active TSS H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived

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