Variant report

Variant	rs55649836
Chromosome Location	chr13:96249567-96249568
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs16951257	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17882446	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17885605	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2389266	1.00[EUR][1000 genomes]
rs34303958	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4394949	1.00[EUR][1000 genomes]
rs55671956	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56397503	1.00[EUR][1000 genomes]
rs58386476	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs60689318	1.00[EUR][1000 genomes]
rs61645359	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7323853	1.00[EUR][1000 genomes]
rs74106020	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74106032	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74106197	1.00[EUR][1000 genomes]
rs74106202	1.00[EUR][1000 genomes]
rs74109004	1.00[EUR][1000 genomes]
rs74109005	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74109006	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74109007	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74109008	0.83[AFR][1000 genomes]
rs74109009	0.89[AFR][1000 genomes]
rs74109010	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74109011	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74109012	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74109013	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74109014	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74109015	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74109016	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74109017	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74109018	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74109019	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74109020	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74109021	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74109022	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7984248	1.00[EUR][1000 genomes]
rs7990355	1.00[EUR][1000 genomes]
rs9671129	1.00[EUR][1000 genomes]

No data

Chromatin state (count:81 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:96224200-96254200	Weak transcription	Brain Hippocampus Middle	brain
2	chr13:96227800-96253600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr13:96229000-96256200	Weak transcription	Gastric	stomach
4	chr13:96229600-96253600	Weak transcription	Adipose Nuclei	Adipose
5	chr13:96229600-96256000	Weak transcription	Right Ventricle	heart
6	chr13:96230200-96258200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr13:96231600-96260000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr13:96231800-96256800	Weak transcription	Skeletal Muscle Female	skeletal muscle
9	chr13:96232200-96272800	Weak transcription	Brain Substantia Nigra	brain
10	chr13:96235400-96253400	Weak transcription	Left Ventricle	heart
11	chr13:96235600-96284200	Weak transcription	Rectal Smooth Muscle	rectum
12	chr13:96238000-96256400	Weak transcription	Placenta	Placenta
13	chr13:96238200-96261000	Weak transcription	Spleen	Spleen
14	chr13:96239800-96259800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
15	chr13:96240000-96252200	Weak transcription	Brain Inferior Temporal Lobe	brain
16	chr13:96240000-96252400	Weak transcription	Brain Cingulate Gyrus	brain
17	chr13:96240000-96253600	Weak transcription	H9 Cell Line	embryonic stem cell
18	chr13:96240000-96261200	Weak transcription	Colon Smooth Muscle	Colon
19	chr13:96240000-96272800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
20	chr13:96240000-96273000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
21	chr13:96240200-96252200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr13:96240200-96252200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr13:96240200-96252200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr13:96240200-96253400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
25	chr13:96240200-96255800	Weak transcription	Fetal Intestine Large	intestine
26	chr13:96240200-96256000	Weak transcription	Fetal Intestine Small	intestine
27	chr13:96240200-96256200	Weak transcription	Aorta	Aorta
28	chr13:96241200-96260800	Weak transcription	Fetal Heart	heart
29	chr13:96242200-96272600	Weak transcription	Brain Angular Gyrus	brain
30	chr13:96243000-96252200	Weak transcription	Duodenum Smooth Muscle	Duodenum
31	chr13:96243000-96253600	Weak transcription	HSMMtube	muscle
32	chr13:96243000-96253800	Weak transcription	H1 Cell Line	embryonic stem cell
33	chr13:96243200-96250800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
34	chr13:96243200-96252000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
35	chr13:96243200-96252000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
36	chr13:96243200-96252200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
37	chr13:96243200-96252200	Weak transcription	Brain Anterior Caudate	brain
38	chr13:96243200-96252200	Weak transcription	Fetal Brain Female	brain
39	chr13:96243200-96253400	Weak transcription	HUVEC	blood vessel
40	chr13:96243200-96256200	Weak transcription	Fetal Brain Male	brain
41	chr13:96243400-96252000	Weak transcription	Fetal Muscle Leg	muscle
42	chr13:96243800-96249800	Weak transcription	Fetal Stomach	stomach
43	chr13:96243800-96252000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
44	chr13:96245400-96254400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
45	chr13:96246000-96252200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
46	chr13:96246000-96254200	Weak transcription	NHDF-Ad	bronchial
47	chr13:96246200-96250400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
48	chr13:96246200-96251400	Weak transcription	HUES48 Cell Line	embryonic stem cell
49	chr13:96246200-96251400	Weak transcription	Brain Germinal Matrix	brain
50	chr13:96246200-96252200	Weak transcription	Fetal Muscle Trunk	muscle

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