Variant report

Variant	rs55650796
Chromosome Location	chr7:48476886-48476887
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 218 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:206)

rs_ID	r²[population]
rs10228865	0.85[AFR][1000 genomes]
rs10230009	0.86[AFR][1000 genomes]
rs10234238	0.86[AFR][1000 genomes]
rs10234633	0.85[AFR][1000 genomes]
rs10238444	0.86[AFR][1000 genomes]
rs10239702	0.86[AFR][1000 genomes]
rs10242000	0.86[AFR][1000 genomes]
rs10246994	0.86[AFR][1000 genomes]
rs10248371	0.86[AFR][1000 genomes]
rs10254742	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10256975	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10260525	0.82[AFR][1000 genomes]
rs10260644	0.84[AFR][1000 genomes]
rs10262568	0.83[AFR][1000 genomes]
rs10270214	0.84[AFR][1000 genomes]
rs10271606	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10272707	0.84[AFR][1000 genomes]
rs10275998	0.85[AFR][1000 genomes]
rs10480938	0.86[AFR][1000 genomes]
rs10480939	0.86[AFR][1000 genomes]
rs10480940	0.86[AFR][1000 genomes]
rs10499681	0.86[AFR][1000 genomes]
rs10499682	0.96[EUR][1000 genomes]
rs10499683	0.92[EUR][1000 genomes]
rs1109443	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12112361	0.81[EUR][1000 genomes]
rs12666688	0.86[AFR][1000 genomes]
rs12667933	0.86[AFR][1000 genomes]
rs12668898	0.85[AFR][1000 genomes]
rs12669314	0.86[AFR][1000 genomes]
rs12669327	0.86[AFR][1000 genomes]
rs12669930	0.96[EUR][1000 genomes]
rs12669976	0.96[EUR][1000 genomes]
rs12671073	0.81[EUR][1000 genomes]
rs12672551	0.81[EUR][1000 genomes]
rs12674031	0.96[EUR][1000 genomes]
rs12718269	0.82[AFR][1000 genomes]
rs12718271	0.84[AFR][1000 genomes]
rs12718274	0.86[AFR][1000 genomes]
rs1316349	0.81[EUR][1000 genomes]
rs1316821	0.96[EUR][1000 genomes]
rs1317162	0.81[EUR][1000 genomes]
rs13221884	0.84[AFR][1000 genomes]
rs13221900	0.81[AFR][1000 genomes]
rs13227183	0.86[AFR][1000 genomes]
rs13238013	0.84[AFR][1000 genomes]
rs13245697	0.85[AFR][1000 genomes]
rs1405920	0.96[EUR][1000 genomes]
rs1433497	0.84[AFR][1000 genomes]
rs1433498	0.84[AFR][1000 genomes]
rs1433504	0.84[AFR][1000 genomes]
rs1433506	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1433507	0.86[AFR][1000 genomes]
rs1527835	0.81[EUR][1000 genomes]
rs1527839	0.81[EUR][1000 genomes]
rs1527840	0.96[EUR][1000 genomes]
rs1594761	0.86[AFR][1000 genomes]
rs1594762	0.86[AFR][1000 genomes]
rs1609213	0.81[EUR][1000 genomes]
rs17092931	0.81[EUR][1000 genomes]
rs17132335	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17132373	0.96[EUR][1000 genomes]
rs17132376	0.96[EUR][1000 genomes]
rs17132383	0.96[EUR][1000 genomes]
rs17132388	0.96[EUR][1000 genomes]
rs17132402	0.94[EUR][1000 genomes]
rs17132417	0.96[EUR][1000 genomes]
rs17132439	0.81[EUR][1000 genomes]
rs17132443	0.81[EUR][1000 genomes]
rs17132460	0.81[EUR][1000 genomes]
rs17132491	0.81[EUR][1000 genomes]
rs17662275	0.86[AFR][1000 genomes]
rs17729791	0.84[AFR][1000 genomes]
rs17729821	0.86[AFR][1000 genomes]
rs17729827	0.86[AFR][1000 genomes]
rs17729863	0.86[AFR][1000 genomes]
rs17729875	0.84[AFR][1000 genomes]
rs1865194	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1918580	0.81[EUR][1000 genomes]
rs1918581	0.81[EUR][1000 genomes]
rs1918586	0.81[EUR][1000 genomes]
rs1918587	0.81[EUR][1000 genomes]
rs1918588	0.81[EUR][1000 genomes]
rs1918589	0.81[EUR][1000 genomes]
rs1918595	0.81[EUR][1000 genomes]
rs1918596	0.81[EUR][1000 genomes]
rs1918597	0.81[EUR][1000 genomes]
rs1918606	0.81[EUR][1000 genomes]
rs1918608	0.81[EUR][1000 genomes]
rs1918613	0.96[EUR][1000 genomes]
rs2163939	0.83[AFR][1000 genomes]
rs2178086	0.81[EUR][1000 genomes]
rs2178087	0.81[EUR][1000 genomes]
rs2217709	0.86[AFR][1000 genomes]
rs2217710	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2222731	0.81[EUR][1000 genomes]
rs2362304	0.86[AFR][1000 genomes]
rs2362307	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs28408591	0.84[AFR][1000 genomes]
rs28481588	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs28589871	0.84[AFR][1000 genomes]
rs28617685	0.84[AFR][1000 genomes]
rs28687524	0.82[AFR][1000 genomes]
rs28707009	0.86[AFR][1000 genomes]
rs28796433	0.86[AFR][1000 genomes]
rs2885484	0.94[EUR][1000 genomes]
rs34222830	0.88[AFR][1000 genomes]
rs34891690	0.84[AFR][1000 genomes]
rs35051826	0.86[AFR][1000 genomes]
rs35132202	0.86[AFR][1000 genomes]
rs35146218	0.84[AFR][1000 genomes]
rs35375355	0.86[AFR][1000 genomes]
rs35598378	0.86[AFR][1000 genomes]
rs36119580	0.83[AFR][1000 genomes]
rs4072501	0.81[EUR][1000 genomes]
rs4072502	0.81[EUR][1000 genomes]
rs4072503	0.81[EUR][1000 genomes]
rs41332948	0.81[EUR][1000 genomes]
rs4144063	0.81[EUR][1000 genomes]
rs4144064	0.81[EUR][1000 genomes]
rs4144067	0.81[EUR][1000 genomes]
rs4587280	0.81[EUR][1000 genomes]
rs55734752	0.84[AFR][1000 genomes]
rs56205257	0.81[EUR][1000 genomes]
rs56213942	0.81[EUR][1000 genomes]
rs56232183	0.96[EUR][1000 genomes]
rs56241442	0.81[EUR][1000 genomes]
rs56244801	0.84[AFR][1000 genomes]
rs56247566	0.84[EUR][1000 genomes]
rs56393952	0.81[EUR][1000 genomes]
rs56806901	0.81[EUR][1000 genomes]
rs57401097	0.81[EUR][1000 genomes]
rs58054917	0.96[EUR][1000 genomes]
rs58077564	0.81[EUR][1000 genomes]
rs58321909	0.81[EUR][1000 genomes]
rs58433353	0.81[EUR][1000 genomes]
rs58486673	0.81[EUR][1000 genomes]
rs58553345	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs58635193	0.81[EUR][1000 genomes]
rs59100514	0.81[EUR][1000 genomes]
rs59243715	0.81[EUR][1000 genomes]
rs60147095	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs60184691	0.81[EUR][1000 genomes]
rs60918397	0.81[EUR][1000 genomes]
rs61171557	0.81[EUR][1000 genomes]
rs61310674	0.81[EUR][1000 genomes]
rs61562434	0.96[EUR][1000 genomes]
rs61602397	0.81[EUR][1000 genomes]
rs61649354	0.81[EUR][1000 genomes]
rs66501875	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs66522605	0.81[EUR][1000 genomes]
rs66591834	0.81[EUR][1000 genomes]
rs66729625	0.81[EUR][1000 genomes]
rs66763020	0.81[EUR][1000 genomes]
rs66793444	0.81[EUR][1000 genomes]
rs66898358	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs66909576	0.81[EUR][1000 genomes]
rs66976409	0.85[AFR][1000 genomes]
rs67001204	0.81[EUR][1000 genomes]
rs67040412	0.81[EUR][1000 genomes]
rs67074321	0.81[EUR][1000 genomes]
rs67081192	0.81[EUR][1000 genomes]
rs67132562	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs67163301	0.96[EUR][1000 genomes]
rs67187623	0.81[EUR][1000 genomes]
rs67223065	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs67249859	0.81[EUR][1000 genomes]
rs67298249	0.81[EUR][1000 genomes]
rs67316911	0.81[EUR][1000 genomes]
rs67331245	0.81[EUR][1000 genomes]
rs67744396	0.81[EUR][1000 genomes]
rs67748204	0.81[EUR][1000 genomes]
rs67764854	0.81[EUR][1000 genomes]
rs67985903	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs68029531	0.81[EUR][1000 genomes]
rs68110103	0.81[EUR][1000 genomes]
rs68168969	0.81[EUR][1000 genomes]
rs68179951	0.81[EUR][1000 genomes]
rs6944801	0.81[EUR][1000 genomes]
rs6963717	0.81[EUR][1000 genomes]
rs6966994	0.81[EUR][1000 genomes]
rs6968069	0.96[EUR][1000 genomes]
rs6972440	0.96[EUR][1000 genomes]
rs6973231	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6977997	0.81[EUR][1000 genomes]
rs6978616	0.86[AFR][1000 genomes]
rs73094625	0.81[EUR][1000 genomes]
rs73107574	0.92[EUR][1000 genomes]
rs73109382	0.81[EUR][1000 genomes]
rs73109385	0.81[EUR][1000 genomes]
rs73109401	0.81[EUR][1000 genomes]
rs7357104	0.85[AFR][1000 genomes]
rs7357239	0.85[AFR][1000 genomes]
rs7357308	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7457791	0.81[EUR][1000 genomes]
rs7778895	0.81[EUR][1000 genomes]
rs7781149	0.81[EUR][1000 genomes]
rs7781150	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7783082	0.86[AFR][1000 genomes]
rs7790171	0.86[AFR][1000 genomes]
rs7794355	0.86[AFR][1000 genomes]
rs7795217	0.86[AFR][1000 genomes]
rs7804139	0.81[EUR][1000 genomes]
rs7807529	0.81[EUR][1000 genomes]
rs7809680	0.86[AFR][1000 genomes]
rs9690617	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817336	chr7:48238233-48563988	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv1022980	chr7:48243227-48567060	Weak transcription Enhancers Genic enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv538833	chr7:48243227-48567060	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv1022578	chr7:48244414-48584664	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv1023575	chr7:48244414-48586685	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv1015183	chr7:48244414-48588598	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv1032221	chr7:48302789-48546684	Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv533811	chr7:48313757-48482470	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	nsv1015399	chr7:48321542-48544359	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
10	esv2761325	chr7:48409639-48557382	Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
11	nsv888006	chr7:48467581-48491825	Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	diseases
12	nsv888007	chr7:48467581-48533508	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:48468000-48500000	Weak transcription	Primary hematopoietic stem cells	blood
2	chr7:48469200-48480200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr7:48471600-48479400	Weak transcription	Primary neutrophils fromperipheralblood	blood

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