Variant report

Variant	rs55650855
Chromosome Location	chr6:39017974-39017975
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:39016886..39018824-chr6:39023068..39025617,2	MCF-7	breast:
2	chr6:39016643..39019473-chr6:39022041..39023583,2	K562	blood:
3	chr6:39014216..39015762-chr6:39017423..39020213,2	K562	blood:

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10305417	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10305519	1.00[EUR][1000 genomes]
rs41376545	1.00[EUR][1000 genomes]
rs55643263	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs55714548	1.00[EUR][1000 genomes]
rs56113843	1.00[EUR][1000 genomes]
rs56765616	0.94[AFR][1000 genomes]
rs57188158	1.00[EUR][1000 genomes]
rs58092834	1.00[EUR][1000 genomes]
rs59648883	1.00[EUR][1000 genomes]
rs60160720	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs60702678	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs61232244	1.00[EUR][1000 genomes]
rs73410586	1.00[EUR][1000 genomes]
rs73410602	1.00[EUR][1000 genomes]
rs73412406	1.00[EUR][1000 genomes]
rs73412421	1.00[EUR][1000 genomes]
rs73412424	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73412493	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73414403	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73426190	1.00[EUR][1000 genomes]
rs73428116	1.00[EUR][1000 genomes]
rs7739218	1.00[EUR][1000 genomes]
rs7756833	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885817	chr6:38036420-39019503	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv1028088	chr6:38821047-39163549	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv538205	chr6:38821047-39163549	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv885821	chr6:38843970-39039503	Bivalent Enhancer Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv948357	chr6:38920998-39035836	Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv1027064	chr6:38984374-39034516	Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	esv1801734	chr6:38986164-39034484	Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:39016000-39020000	Active TSS	Pancreatic Islets	Pancreatic Islet
2	chr6:39017200-39018400	Flanking Active TSS	Pancreas	Pancrea
3	chr6:39017200-39030200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr6:39017400-39019200	Weak transcription	Right Atrium	heart
5	chr6:39017400-39019800	Flanking Active TSS	Fetal Heart	heart
6	chr6:39017400-39020200	Enhancers	Breast Myoepithelial Primary Cells	Breast
7	chr6:39017600-39018000	Bivalent Enhancer	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr6:39017600-39018200	Enhancers	Right Ventricle	heart
9	chr6:39017800-39019200	Enhancers	Dnd41	blood
10	chr6:39017800-39020400	Enhancers	HMEC	breast
11	chr6:39017800-39020600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
12	chr6:39017800-39021000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr6:39017800-39026400	Weak transcription	H9 Cell Line	embryonic stem cell

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