Variant report

Variant	rs55654090
Chromosome Location	chr5:98330564-98330565
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs1007453	0.86[AFR][1000 genomes]
rs10515285	0.91[AFR][1000 genomes]
rs17166461	0.89[AFR][1000 genomes]
rs17166471	0.94[AFR][1000 genomes]
rs17166564	0.87[AFR][1000 genomes]
rs3860806	0.86[AFR][1000 genomes]
rs57249217	0.94[AFR][1000 genomes]
rs57253975	0.92[AFR][1000 genomes]
rs58477983	0.91[AFR][1000 genomes]
rs60298381	0.91[AFR][1000 genomes]
rs61515191	0.92[AFR][1000 genomes]
rs6864720	0.87[AFR][1000 genomes]
rs731496	0.90[AFR][1000 genomes]
rs73153600	0.87[AFR][1000 genomes]
rs73155434	0.85[AFR][1000 genomes]
rs73155446	0.90[AFR][1000 genomes]
rs73155478	0.92[AFR][1000 genomes]
rs73155484	0.90[AFR][1000 genomes]
rs73155486	0.88[AFR][1000 genomes]
rs73157407	1.00[AFR][1000 genomes]
rs73157426	0.96[AFR][1000 genomes]
rs73776057	0.83[AFR][1000 genomes]
rs73776061	0.94[AFR][1000 genomes]
rs7707061	0.83[AFR][1000 genomes]
rs7732611	0.96[AFR][1000 genomes]
rs963689	0.96[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1826071	chr5:98312447-98358852	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	esv1827754	chr5:98312447-98358852	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv1837772	chr5:98312447-98358852	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	esv1838335	chr5:98312447-98358852	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	esv1845131	chr5:98312447-98358852	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv4930	chr5:98318768-98350644	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:98326200-98331600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
2	chr5:98328000-98330600	Enhancers	Thymus	Thymus
3	chr5:98328600-98330800	Enhancers	Fetal Thymus	thymus
4	chr5:98329000-98331800	Enhancers	Stomach Mucosa	stomach
5	chr5:98329200-98330600	Enhancers	Gastric	stomach
6	chr5:98329400-98330800	Enhancers	Fetal Intestine Large	intestine
7	chr5:98329800-98332600	Weak transcription	Placenta	Placenta
8	chr5:98330200-98330800	Enhancers	HepG2	liver
9	chr5:98330400-98330600	Enhancers	HUES6 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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