Variant report

Variant	rs556571803
Chromosome Location	chr18:30857791-30857792
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv909527	chr18:30548902-30908581	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv438279	chr18:30852119-30862517	Enhancers Active TSS	n/a	n/a	inside rSNPs	diseases
3	nsv576640	chr18:30854237-30930418	ZNF genes & repeats Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
4	esv3363260	chr18:30855003-30877581	Weak transcription Enhancers Active TSS ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
5	nsv576641	chr18:30856949-30930418	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:30857200-30858000	Enhancers	HUES48 Cell Line	embryonic stem cell
2	chr18:30857400-30857800	Enhancers	ES-I3 Cell Line	embryonic stem cell
3	chr18:30857400-30858000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr18:30857400-30858000	Enhancers	H9 Cell Line	embryonic stem cell
5	chr18:30857400-30858000	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr18:30857400-30858000	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr18:30857400-30858000	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr18:30857400-30858000	Enhancers	iPS-18 Cell Line	embryonic stem cell
9	chr18:30857600-30858000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr18:30857600-30858000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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