Variant report

Variant	rs55660533
Chromosome Location	chr5:98177591-98177592
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10515285	0.82[AFR][1000 genomes]
rs11954623	1.00[AMR][1000 genomes]
rs11957518	1.00[AMR][1000 genomes]
rs1508794	1.00[AMR][1000 genomes]
rs1508795	1.00[AMR][1000 genomes]
rs17166354	1.00[AMR][1000 genomes]
rs17166367	1.00[AMR][1000 genomes]
rs17166368	1.00[AMR][1000 genomes]
rs17166461	0.84[AFR][1000 genomes]
rs2035229	1.00[AMR][1000 genomes]
rs2036691	1.00[AMR][1000 genomes]
rs35394679	0.86[AFR][1000 genomes]
rs3952932	1.00[AMR][1000 genomes]
rs57293752	1.00[AMR][1000 genomes]
rs58710516	1.00[AMR][1000 genomes]
rs60298381	0.82[AFR][1000 genomes]
rs6864720	0.86[AFR][1000 genomes]
rs6890688	1.00[AMR][1000 genomes]
rs6895731	1.00[AMR][1000 genomes]
rs73151405	1.00[AMR][1000 genomes]
rs73151407	1.00[AMR][1000 genomes]
rs73151426	1.00[AMR][1000 genomes]
rs73151428	1.00[AMR][1000 genomes]
rs73151441	1.00[AMR][1000 genomes]
rs73151444	1.00[AMR][1000 genomes]
rs73151454	1.00[AMR][1000 genomes]
rs73151459	1.00[AMR][1000 genomes]
rs73151463	1.00[AMR][1000 genomes]
rs73151464	1.00[AMR][1000 genomes]
rs73151473	1.00[AMR][1000 genomes]
rs73153510	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73153574	0.95[AFR][1000 genomes]
rs73153600	0.86[AFR][1000 genomes]
rs73155434	0.80[AFR][1000 genomes]
rs73157630	1.00[AMR][1000 genomes]
rs73157639	1.00[AMR][1000 genomes]
rs7707936	1.00[AMR][1000 genomes]
rs906681	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882414	chr5:98063710-98193164	Strong transcription Weak transcription Active TSS Flanking Active TSS Genic enhancers Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
2	nsv882415	chr5:98134186-98312447	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
3	nsv882416	chr5:98146106-98312447	Bivalent/Poised TSS Strong transcription Genic enhancers Weak transcription Enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:98172200-98179800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr5:98175600-98190000	Weak transcription	HUVEC	blood vessel
3	chr5:98175800-98190600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr5:98177400-98178200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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