Variant report

Variant	rs556664395
Chromosome Location	chr8:110252771-110252772
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:110252631..110254624-chr8:110265466..110267437,3	MCF-7	breast:
2	chr8:110251256..110254212-chr8:110254485..110256380,2	K562	blood:
3	chr8:110251271..110254204-chr8:110279241..110281441,2	K562	blood:
4	chr8:110252748..110254805-chr8:110344261..110345885,2	K562	blood:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023204	chr8:110169573-110303085	Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Active TSS	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1031663	chr8:110177432-110303085	Weak transcription Genic enhancers Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv891272	chr8:110217266-110268104	Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Enhancers Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv891273	chr8:110219735-110475874	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
5	nsv891274	chr8:110224047-110308776	Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv891275	chr8:110224047-110319234	Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv891276	chr8:110232329-110308776	Weak transcription Active TSS Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	nsv891277	chr8:110251998-110300579	Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
9	nsv891278	chr8:110251998-110308776	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:103 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:110211200-110311600	Weak transcription	Right Ventricle	heart
2	chr8:110234800-110264200	Weak transcription	Primary B cells from peripheral blood	blood
3	chr8:110235400-110271400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr8:110235400-110275000	Weak transcription	Fetal Brain Male	brain
5	chr8:110236000-110264200	Weak transcription	Spleen	Spleen
6	chr8:110236000-110265400	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr8:110236200-110264200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
8	chr8:110236200-110308800	Weak transcription	Thymus	Thymus
9	chr8:110236200-110309200	Weak transcription	Stomach Smooth Muscle	stomach
10	chr8:110236400-110257400	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr8:110236600-110264200	Weak transcription	Primary T cells fromperipheralblood	blood
12	chr8:110236600-110344200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr8:110237000-110283800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
14	chr8:110237200-110271400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr8:110237600-110259200	Weak transcription	Brain Anterior Caudate	brain
16	chr8:110237800-110254200	Weak transcription	Fetal Thymus	thymus
17	chr8:110237800-110254200	Weak transcription	Rectal Mucosa Donor 29	rectum
18	chr8:110237800-110254800	Weak transcription	Monocytes-CD14+_RO01746	blood
19	chr8:110237800-110264200	Weak transcription	Fetal Lung	lung
20	chr8:110237800-110271400	Weak transcription	H1 Cell Line	embryonic stem cell
21	chr8:110238000-110311600	Weak transcription	Skeletal Muscle Male	skeletal muscle
22	chr8:110238200-110254200	Weak transcription	Duodenum Smooth Muscle	Duodenum
23	chr8:110238200-110264200	Weak transcription	Fetal Muscle Leg	muscle
24	chr8:110238200-110286600	Weak transcription	Ovary	ovary
25	chr8:110239200-110257600	Weak transcription	Lung	lung
26	chr8:110239600-110255200	Weak transcription	Sigmoid Colon	Sigmoid Colon
27	chr8:110239600-110274400	Weak transcription	Pancreas	Pancrea
28	chr8:110239800-110254200	Weak transcription	Liver	Liver
29	chr8:110240400-110274800	Weak transcription	Small Intestine	intestine
30	chr8:110241400-110253800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
31	chr8:110241800-110256200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr8:110241800-110295600	Weak transcription	Psoas Muscle	Psoas
33	chr8:110242000-110252800	Weak transcription	HSMM	muscle
34	chr8:110242000-110274400	Weak transcription	Cortex derived primary cultured neurospheres	brain
35	chr8:110242000-110274600	Weak transcription	HSMMtube	muscle
36	chr8:110242000-110283600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
37	chr8:110242200-110254200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
38	chr8:110242200-110255800	Weak transcription	Hela-S3	cervix
39	chr8:110242200-110266200	Weak transcription	Fetal Intestine Small	intestine
40	chr8:110242200-110274400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
41	chr8:110242200-110289800	Weak transcription	Colonic Mucosa	Colon
42	chr8:110242400-110252800	Weak transcription	HUVEC	blood vessel
43	chr8:110242400-110255000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
44	chr8:110242400-110274200	Weak transcription	NH-A	brain
45	chr8:110242400-110274400	Weak transcription	Gastric	stomach
46	chr8:110242400-110282800	Weak transcription	A549	lung
47	chr8:110242400-110305000	Weak transcription	NHLF	lung
48	chr8:110242600-110291200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
49	chr8:110242800-110285000	Weak transcription	Esophagus	oesophagus
50	chr8:110243200-110291000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood

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