Variant report

Variant	rs55672953
Chromosome Location	chr5:92636052-92636053
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs4277899	1.00[EUR][1000 genomes]
rs6557060	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830400	chr5:92515026-92738896	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv830401	chr5:92518294-92703611	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv882381	chr5:92576494-92649716	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:92630400-92638200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr5:92632200-92638200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr5:92632200-92642600	Weak transcription	Hela-S3	cervix
4	chr5:92633000-92638000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr5:92633800-92637400	Enhancers	Fetal Kidney	kidney
6	chr5:92634800-92642200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr5:92635000-92636200	Enhancers	Cortex derived primary cultured neurospheres	brain
8	chr5:92635200-92636200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr5:92635200-92636400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr5:92635200-92636400	Enhancers	NH-A	brain
11	chr5:92635400-92636200	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
12	chr5:92635400-92636200	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
13	chr5:92635400-92636400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr5:92635400-92636400	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr5:92635400-92636400	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
16	chr5:92635400-92636400	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
17	chr5:92635400-92636400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
18	chr5:92635400-92637000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr5:92635600-92636200	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
20	chr5:92635800-92636400	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr5:92635800-92641200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr5:92635800-92641800	Weak transcription	Brain Hippocampus Middle	brain
23	chr5:92636000-92636600	Enhancers	H1 Cell Line	embryonic stem cell
24	chr5:92636000-92636600	Enhancers	iPS-15b Cell Line	embryonic stem cell
25	chr5:92636000-92637600	Enhancers	HUES64 Cell Line	embryonic stem cell
26	chr5:92636000-92638200	Weak transcription	Brain Germinal Matrix	brain
27	chr5:92636000-92638200	Weak transcription	Fetal Lung	lung

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