Variant report

Variant	rs55690281
Chromosome Location	chr11:70856473-70856474
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:70856232..70858594-chr11:70962827..70965344,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000162105	Chromatin interaction

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs11232452	1.00[EUR][1000 genomes]
rs11232477	1.00[EUR][1000 genomes]
rs11232508	1.00[EUR][1000 genomes]
rs11820146	1.00[AFR][1000 genomes]
rs11820282	0.98[AFR][1000 genomes]
rs11822742	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11822962	1.00[AFR][1000 genomes]
rs11826649	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11827505	1.00[AFR][1000 genomes]
rs11828210	1.00[AFR][1000 genomes]
rs3934693	1.00[EUR][1000 genomes]
rs4072326	1.00[EUR][1000 genomes]
rs4943820	1.00[EUR][1000 genomes]
rs4943871	1.00[EUR][1000 genomes]
rs55656100	0.82[EUR][1000 genomes]
rs55712817	1.00[EUR][1000 genomes]
rs55788978	1.00[EUR][1000 genomes]
rs55836628	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs55897315	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55928066	1.00[EUR][1000 genomes]
rs56162839	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56220831	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs56255416	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs56368604	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57007124	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57772484	1.00[AFR][1000 genomes]
rs58224946	1.00[AFR][1000 genomes]
rs58661988	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs58984468	1.00[EUR][1000 genomes]
rs59858246	1.00[AFR][1000 genomes]
rs59894456	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61037105	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73521132	0.82[EUR][1000 genomes]
rs73521141	0.82[EUR][1000 genomes]
rs7927453	1.00[AFR][1000 genomes]
rs7938379	1.00[AFR][1000 genomes]
rs7944885	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048123	chr11:70795222-71231382	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:70824000-70861600	Weak transcription	A549	lung
2	chr11:70832200-70860600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr11:70832200-70863600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr11:70832200-70864400	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr11:70841200-70857400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr11:70842400-70860600	Weak transcription	Fetal Intestine Large	intestine
7	chr11:70842600-70860800	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr11:70843200-70856800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr11:70843400-70857200	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr11:70851400-70857600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr11:70851600-70857400	Weak transcription	Gastric	stomach
12	chr11:70851600-70857600	Weak transcription	Placenta	Placenta
13	chr11:70852000-70857400	Weak transcription	Liver	Liver
14	chr11:70854400-70858800	Strong transcription	Fetal Intestine Small	intestine
15	chr11:70854400-70858800	Strong transcription	Pancreas	Pancrea
16	chr11:70854400-70859800	Strong transcription	HepG2	liver
17	chr11:70855400-70856600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr11:70855800-70856600	Enhancers	Breast Myoepithelial Primary Cells	Breast
19	chr11:70855800-70856600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr11:70855800-70856600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr11:70856200-70858600	Strong transcription	Fetal Stomach	stomach
22	chr11:70856400-70858200	Genic enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
23	chr11:70856400-70858600	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links