Variant report

Variant	rs55693428
Chromosome Location	chr4:148013280-148013281
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs10519866	0.87[EUR][1000 genomes]
rs11929880	1.00[EUR][1000 genomes]
rs11934394	1.00[EUR][1000 genomes]
rs11935350	1.00[EUR][1000 genomes]
rs11935438	1.00[EUR][1000 genomes]
rs11936420	1.00[EUR][1000 genomes]
rs11940408	1.00[EUR][1000 genomes]
rs11940672	1.00[EUR][1000 genomes]
rs11940837	1.00[EUR][1000 genomes]
rs11940955	1.00[EUR][1000 genomes]
rs11941436	1.00[EUR][1000 genomes]
rs11941445	1.00[EUR][1000 genomes]
rs11941654	1.00[EUR][1000 genomes]
rs11941745	1.00[EUR][1000 genomes]
rs11941828	1.00[EUR][1000 genomes]
rs11941835	1.00[EUR][1000 genomes]
rs11942353	1.00[EUR][1000 genomes]
rs11942559	1.00[EUR][1000 genomes]
rs11942610	1.00[EUR][1000 genomes]
rs11944039	1.00[EUR][1000 genomes]
rs11945211	1.00[EUR][1000 genomes]
rs11945471	1.00[EUR][1000 genomes]
rs11945733	1.00[EUR][1000 genomes]
rs11946351	1.00[EUR][1000 genomes]
rs11946419	1.00[EUR][1000 genomes]
rs11947471	1.00[EUR][1000 genomes]
rs17022582	1.00[EUR][1000 genomes]
rs17022600	1.00[EUR][1000 genomes]
rs17022603	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35044197	1.00[EUR][1000 genomes]
rs61415692	1.00[EUR][1000 genomes]
rs62341462	1.00[EUR][1000 genomes]
rs62341463	1.00[EUR][1000 genomes]
rs62341464	1.00[EUR][1000 genomes]
rs62341465	1.00[EUR][1000 genomes]
rs62341479	1.00[AMR][1000 genomes]
rs62341480	1.00[AMR][1000 genomes]
rs62341524	1.00[AMR][1000 genomes]
rs62342963	1.00[AMR][1000 genomes]
rs62343683	1.00[EUR][1000 genomes]
rs62343687	1.00[EUR][1000 genomes]
rs62343692	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62343693	1.00[EUR][1000 genomes]
rs62343695	1.00[EUR][1000 genomes]
rs62343696	1.00[EUR][1000 genomes]
rs62343697	1.00[EUR][1000 genomes]
rs62343698	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62343699	1.00[EUR][1000 genomes]
rs62343700	1.00[EUR][1000 genomes]
rs62343701	1.00[EUR][1000 genomes]
rs62343702	1.00[EUR][1000 genomes]
rs62343703	1.00[EUR][1000 genomes]
rs73853360	1.00[EUR][1000 genomes]
rs73853361	1.00[EUR][1000 genomes]
rs73853362	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv880240	chr4:147905897-148032003	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv1024629	chr4:147987351-148277008	Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:148009800-148014400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr4:148009800-148017400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr4:148010000-148017000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr4:148010000-148022800	Weak transcription	NHLF	lung
5	chr4:148010200-148015000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr4:148010200-148017800	Weak transcription	Osteobl	bone
7	chr4:148010400-148021200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr4:148010800-148018000	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr4:148012800-148013400	Enhancers	Primary B cells from peripheral blood	blood
10	chr4:148013200-148016800	Weak transcription	Fetal Heart	heart

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