Variant report

Variant	rs556941290
Chromosome Location	chr7:104954802-104954803
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34588	chr7:104737612-105153242	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	esv2757233	chr7:104758250-105208492	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	esv2759549	chr7:104758250-105208492	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
4	nsv8196	chr7:104763559-105155978	Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
5	esv34580	chr7:104763580-105153242	Enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
6	esv2758127	chr7:104766707-105110581	Enhancers Strong transcription Active TSS Flanking Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
7	nsv1028228	chr7:104807207-105182998	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
8	nsv932138	chr7:104826194-105152816	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
9	nsv1015688	chr7:104849770-105182998	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
10	nsv1029832	chr7:104905057-105112489	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
11	esv2753646	chr7:104905588-104972800	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
12	nsv1023767	chr7:104931143-105190662	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
13	nsv539049	chr7:104931143-105190662	Flanking Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
14	nsv1034689	chr7:104950564-105085879	Bivalent/Poised TSS Active TSS Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
15	esv3416207	chr7:104954531-104955061	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:104920600-104959600	Weak transcription	Primary hematopoietic stem cells	blood
2	chr7:104939600-104966200	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr7:104945400-104972600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr7:104945800-104955400	Weak transcription	Liver	Liver
5	chr7:104945800-104961200	Weak transcription	Ovary	ovary
6	chr7:104946200-104957000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr7:104948600-104988000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
8	chr7:104950600-104955200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr7:104950600-104955600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr7:104950600-104955800	Weak transcription	Adipose Nuclei	Adipose
11	chr7:104950600-104956600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr7:104950600-104957200	Weak transcription	Skeletal Muscle Female	skeletal muscle
13	chr7:104950600-104959200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
14	chr7:104950600-104962800	Weak transcription	Pancreas	Pancrea
15	chr7:104950600-104965600	Weak transcription	Primary B cells from cord blood	blood
16	chr7:104950600-104972200	Weak transcription	Sigmoid Colon	Sigmoid Colon
17	chr7:104950800-104955400	Weak transcription	Primary T helper cells PMA-I stimulated	--
18	chr7:104950800-104955600	Weak transcription	Pancreatic Islets	Pancreatic Islet
19	chr7:104950800-104955600	Weak transcription	Osteobl	bone
20	chr7:104950800-104957200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
21	chr7:104950800-104957200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr7:104950800-104957200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
23	chr7:104950800-104962400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
24	chr7:104950800-104963600	Weak transcription	Primary T cells from cord blood	blood
25	chr7:104950800-104965400	Weak transcription	Primary B cells from peripheral blood	blood
26	chr7:104950800-104967800	Weak transcription	Gastric	stomach
27	chr7:104951000-104962600	Weak transcription	Left Ventricle	heart
28	chr7:104951200-104958200	Weak transcription	Primary T cells fromperipheralblood	blood
29	chr7:104951600-104961000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
30	chr7:104952000-104958600	Weak transcription	Lung	lung
31	chr7:104952200-104959400	Weak transcription	GM12878-XiMat	blood
32	chr7:104952200-104966200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
33	chr7:104954600-104956200	Enhancers	Dnd41	blood
34	chr7:104954800-104957000	Weak transcription	Stomach Mucosa	stomach
35	chr7:104954800-104957200	Weak transcription	Fetal Lung	lung
36	chr7:104954800-104961200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
37	chr7:104954800-104971200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
38	chr7:104954800-104972400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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