Variant report

Variant	rs55696085
Chromosome Location	chr4:47475098-47475099
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10002676	0.97[AFR][1000 genomes]
rs28493220	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28525043	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56056018	0.83[AMR][1000 genomes]
rs58507357	1.00[AMR][1000 genomes]
rs59324835	1.00[AMR][1000 genomes]
rs60727801	1.00[AMR][1000 genomes]
rs6818323	1.00[AMR][1000 genomes]
rs73813529	1.00[AMR][1000 genomes]
rs73813530	1.00[AMR][1000 genomes]
rs73813531	1.00[AMR][1000 genomes]
rs73813540	1.00[AMR][1000 genomes]
rs73813541	1.00[AMR][1000 genomes]
rs73813543	1.00[AMR][1000 genomes]
rs73813547	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7684002	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998919	chr4:47207023-47476876	Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Strong transcription Enhancers Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv879005	chr4:47408838-47548254	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv829923	chr4:47436139-47678443	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:47466000-47475400	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr4:47471200-47487000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr4:47473200-47475800	Enhancers	HepG2	liver
4	chr4:47474200-47476800	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr4:47474800-47476000	Weak transcription	Placenta	Placenta
6	chr4:47475000-47475200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
7	chr4:47475000-47475800	Enhancers	Primary neutrophils fromperipheralblood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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