Variant report

Variant	rs55698195
Chromosome Location	chr4:87793450-87793451
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOS	chr4:87793401-87793660	MCF10A-Er-Src	breast:	n/a	chr4:87793511-87793522 chr4:87793543-87793552
2	FOS	chr4:87793426-87793676	MCF10A-Er-Src	breast:	n/a	chr4:87793511-87793522 chr4:87793543-87793552

Variant related genes	Relation type
ENSG00000250202	TF binding region

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10011798	0.88[ASN][1000 genomes]
rs10015121	0.88[ASN][1000 genomes]
rs10015477	0.88[ASN][1000 genomes]
rs10015639	0.84[EUR][1000 genomes]
rs10021020	0.93[ASN][1000 genomes]
rs10021790	0.90[ASN][1000 genomes]
rs10034336	0.86[ASN][1000 genomes]
rs1010902	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1010903	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10516786	0.84[EUR][1000 genomes]
rs11097124	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13115795	0.84[ASN][1000 genomes]
rs13120981	0.93[ASN][1000 genomes]
rs13137483	0.93[ASN][1000 genomes]
rs17012132	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17012170	0.89[EUR][1000 genomes]
rs17012200	0.86[EUR][1000 genomes]
rs17012213	0.86[EUR][1000 genomes]
rs17012216	0.86[EUR][1000 genomes]
rs17751427	0.91[EUR][1000 genomes]
rs17751557	0.90[EUR][1000 genomes]
rs1985944	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2053771	0.89[EUR][1000 genomes]
rs2121871	0.93[ASN][1000 genomes]
rs28446826	0.87[ASN][1000 genomes]
rs28641910	0.88[ASN][1000 genomes]
rs28650493	0.88[ASN][1000 genomes]
rs28716151	0.93[ASN][1000 genomes]
rs35428486	0.91[ASN][1000 genomes]
rs4693153	0.90[EUR][1000 genomes]
rs4693154	0.90[EUR][1000 genomes]
rs4693795	0.87[EUR][1000 genomes]
rs55831707	0.90[EUR][1000 genomes]
rs55851914	0.86[EUR][1000 genomes]
rs56201068	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61651372	0.90[EUR][1000 genomes]
rs6531941	0.84[EUR][1000 genomes]
rs6823051	0.91[ASN][1000 genomes]
rs6846822	0.88[ASN][1000 genomes]
rs72667703	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72667705	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72667716	0.90[EUR][1000 genomes]
rs72667721	0.90[EUR][1000 genomes]
rs72667724	0.90[EUR][1000 genomes]
rs72667727	0.90[EUR][1000 genomes]
rs72667735	0.86[EUR][1000 genomes]
rs72667736	0.86[EUR][1000 genomes]
rs72667737	0.86[EUR][1000 genomes]
rs72667739	0.86[EUR][1000 genomes]
rs72667741	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv594787	chr4:87221827-87888667	Enhancers Weak transcription Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv1013308	chr4:87769694-87870168	Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	nsv508297	chr4:87778783-87868508	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
4	nsv967771	chr4:87781398-87798513	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:87779200-87798400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr4:87785000-87799400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr4:87793000-87793600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr4:87793200-87793800	Enhancers	HMEC	breast
5	chr4:87793200-87793800	Enhancers	NHEK	skin
6	chr4:87793200-87794200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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